G195847


Basic Information

Item Value
gene id G195847
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 13514676 ~ 13517886 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU231948
AGGATCAGTGGAACAAGCACAACTTTAATTTTCTCATGCCAAATGTAGCAGTAGTTTGTGCTGTGATAAAGAGACCTATGGGAAACTGGCTCTTTACTGAGGGCAAACAGTGACAAGGTTATCAGCCTGTGTGCTTTTAAACCTTCCCATCTTCGTTAACCTGCTCTCAGCACTCTGGCCACCCATTGTATTGTGTAAGGAACATGatgatccagtgtgtgtgtgtgtgtgtgtgtgtgggtttgttcAACAACATCCTGCCCTGAATTCGACATGAGTCACATGATTGGATAAACTCAGGATAAAGAAAGCCTGCCtggagtttttatttatgttgaGTTCTGAGGCTTGCGTTTAGCATCGACATTTTTATGAGGCGGTCTGTGAAATATTTACCTCCatcctcctttctctttctcttccttttttatGCTGTCCCTCTTCTAACCTTTCATGATTTGGCAGGAAGCCCCTGTCAACCATGTTAGCACTGTGGCACTCTCACAACACACCCCTCTAGTTTACACTGGCTGACCGTCCGCATGCTTCACACAGCCGTGCATTCATTCATGCAGCGAGGATGCACTCGGGTTTACAGCCTCACAGTCAGGAAATGCCTGCCTGCTCTTAtggcatgtatgtatgtgtgtgtagtaaaggGTATGTGTCCTGCTGTGTAAAATGAATAGATGTGGACCTAAGTGTGACCTCAGACAGAGGAAATAGACTGTAAATGGGGGATGATGGTGAGCAAGGATGTTAGTGGTTTGTTTTAGAGTcatgtgaaagagtgtgtgttatagaatgATTGCCTGACCTGCGACGTCCATCTTCTTCAAAGtgccttcatttgaattttgaattccATGGATCTTATAGTCAGAACTAAATGAATGTGTAACATTTATCAGAGATTCATTCCATATGTGTAATTCTGATGATGGAGAAAAAACTCCAAGCTCTTATGAAGTGTTGTGGACAGGTACATCAGGGAGAAGCTGCTCCTTTCAGTTCACTGTGTATTCATAAGTGCCACGTTTGGTGCTCAACTTCAGCTCGGTCTGTTGCGGGACTTTTAAAACGTTCAGACCCTCCAGGCGTTCTGCTCACAGCCTCGTCGTCTTCCGAGCATCATCTTTGTGAGCGCTCTTGCTAGCGAGCCGCATTTGtgttatgtaaattattttttctctcatctTCCGGAATGGTGGcgattatttctctttcttttgctttctccTGAAGCAGCTGGCATGAAGAGGCTGCTTTTCAGTTCTGGCATCTGGGCTTGAACGTATGCCAGCGTATGAGTGAGGAAGCAGAGTGGGTCGTGTTTATGTGCATGCATGTACAGCGGCGTGTCATGTGGGTCGAGGTTAAGGATGTTTGCACGAGACAAGGCCACAGTCTATCTGCCTTAATTGTCCTCTTGTCCACTGGCAGAGAAACGATCTATTAAGAGGaaagcagtgagtgtgtgtgaaagagaaagagagttgTTTGGCAGCATTCTCCAGGCACAGACTGGCATGATACGGGGCTGCAGAGTGTCTCGTTCACGCCTCGACCCTCCTTAGTGGACACAAATAGTTGGGGGAGCTCAAAAGAGCGCCGTACAATGAGTAGCCTTGGTCTGCCAAATGCAACGTTGGCGCGGAGATCAGGGGACTGAAATTGTTTAGCTCATCTTCTTATATTTAGCATTGTGAAGAGAGCTGCGGCATTGTGGCAAGAGCTCGTCGCCAAGTCGTCGAGGGAATAGCTCTTTGTATTGCTCCACTGATCAATTGCTCATTGATCGCCTCGCTGCGTGTAGGTAATAATGGACTCAGCTTTTGAAGAGGTCTTATGCTGGGTGAATAATCAGATTTCCATTTCttcccccacccccaccctgCTCTGAGGTTTTGTAAAACGTTGCCGCCAGAACTTGTTTGACAAGGTTGGGGTGGGGCACCTCAACGCATGTTGCTGGGTTTGtgggtgtgagtgcatgtgtgcagGGTGTTTGTTAAGGTGTTTAATTCCAAATGTTGATCTACATGTCCACATATATTTGGCGTGGGTGTTCCTGCCCATGCCCATTTTGCATGTGTGCAAGAGAGAGTTCAGCTGAATGACAAGCAAATGTGTACACCGCATGACTTAACTAAGGCTGGGGTCAGGTTTTTAAGCTCGGCTGCACATGATTTCACTGCAACACTGCAGCACGGCGGTGGATCTGAATCAGTACAGTTCACGTTCTGTCTATGGCAGGAAAAGGCCATAACATGGGAGAGCGTTCTGTAAATGTGTGAGATTTCTGACTTCCTAAAGGACTTCCTGTGAGCCAGCGTGTAAGTGGAtacacactcctcctctcctACACCCTCAGGCTGCATGATCTGGACAAAATTAGCATACTGCGATTATTATTGCTGCACATTTAGATTGTGATTGCGATTATATGTTGCCGTGTGTAACGTCTCAACATGGGACCTAGTTTTTTGACAAGTATATTTTGATTAAATAGGCCTTTTCCAGATGTCAGTCCTCTAACCTGCCCTGGGCCAGGCACAACTTCCCCTGTTATTCCCTCATGATGACAGAGTTGCTTAAACtatattaaatacaaactaGTGAACCTCTATTGCATCATGATTACAAGGTCCTGGTGTCGGTTTGgaaagtgtaaaatattaagATCCCTATTGTCATGCCTGGAAAAGTGTAATAGCTATagtataaaaaacatttaggaAAAATATAGATAAGgatttagatttgtttttatgaaAGTAAGAACCACAGCACTATATTTCTAAATCTGTTATACTGTGTGTAGAGGGTCCCTTATTTTcagcacattttatatttttcagcacattttatatttttatatatttatggtaCAATTAGTGACCTTTAAACAGTAGCAACAAAACTGAACATAAAAGGTGGGAAagtttaaaaatcacacaaaaaaaattgttggaaATGATGTGAAATATTTTTCCCAAAGTGGTAAGGCCTGGAATAAAGAGGAACCATGATTCATTTgggcaaaaataaatgtttttaataataaatgttctttGAATGATTACACCAACATAACATTTACCTGAGATTGTTCAGGATGCTTACAGAGCAAACACACAATCATAAACACTACAGACTTCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU231948 True 3163 lncRNA 0.43 2 13514676 13517886

Neighbor

gene id symbol gene type direction distance location
vti1a vti1a,LOC107702459,LOC107566351 coding upstream 52632 13355852 ~ 13462044 (+)
acsl5 acsl5,LOC107702457,LOC107755526,LOC107566323,LOC107722228,LOC107684041,LOC107581566 coding upstream 164201 13341575 ~ 13350475 (+)
tectb tectb,LOC107684045,LOC107566341,LOC107581573,LOC107755437,LOC107722201,LOC107702437 coding upstream 183606 13327700 ~ 13331070 (+)
nrap nrap,LOC107755535 coding upstream 295260 13204326 ~ 13219416 (+)
si:ch211-28p3.4 LOC108273726,LOC103041412,LOC108426492 coding upstream 319546 13193024 ~ 13195130 (+)
crygmx LOC108273487 coding downstream 96313 13614199 ~ 13617164 (+)
entpd1 entpd1 coding downstream 122291 13640177 ~ 13655847 (+)
psme4b psme4,psme4b,LOC108426507,LOC107584369,LOC107749369,LOC107686372 coding downstream 218562 13736448 ~ 13758533 (+)
mrpl43 mrpl43,LOC107722220,LOC107565786,LOC107581592 coding downstream 277207 13795093 ~ 13797650 (+)
mfsd13a mfsd13a,LOC107565800,LOC107581593,LOC107690908,LOC107755491,LOC106579271 coding downstream 308221 13826107 ~ 13836370 (+)
G195839 NA non-coding upstream 47693 13466765 ~ 13466983 (+)
LOC113527319 NA non-coding upstream 448054 13063864 ~ 13066622 (+)
G195512 NA non-coding upstream 670115 12844325 ~ 12844561 (+)
G195301 NA non-coding upstream 856353 12658105 ~ 12658323 (+)
G195287 NA non-coding upstream 871150 12643268 ~ 12643526 (+)
G195857 NA non-coding downstream 100778 13618664 ~ 13618939 (+)
G195994 NA non-coding downstream 175829 13693715 ~ 13695761 (+)
G196202 NA non-coding downstream 505701 14023587 ~ 14043932 (+)
G196265 NA non-coding downstream 608632 14126518 ~ 14127031 (+)
G196289 NA non-coding downstream 645685 14163571 ~ 14166015 (+)
ablim1b ablim1,ablim1b,LOC107565789,LOC107689952,LOC107755543 other upstream 492681 12958935 ~ 13021995 (+)
LOC113527673 LOC108273669,LOC108273679 other upstream 1040693 12472679 ~ 12473983 (+)
LOC113527436 uts2r,LOC108273405,LOC108426413,LOC107754100,LOC107689263,LOC107552777 other upstream 1429317 12062808 ~ 12085359 (+)
tmem106a tmem106a other upstream 1893407 11613899 ~ 11621269 (+)
trnaq-cug_16 NA other upstream 2228408 11286197 ~ 11286268 (+)
tha1 LOC108274193,LOC108426437,LOC102310306,LOC107683136,LOC107722240,LOC107581676 other downstream 495687 14013573 ~ 14034143 (+)
qki2 qki2,LOC108426533,LOC108274051,LOC103029551,LOC107690925,LOC107755469 other downstream 769473 14287359 ~ 14324281 (+)
anapc16 anapc16,cj104 other downstream 3337803 16855689 ~ 16863495 (+)
mta3 LOC108273982,LOC108430512,LOC107582777,LOC107728718,LOC107698822 other downstream 4027907 17545793 ~ 17572065 (+)
pde6gb pde6g,LOC102781464,LOC103367935,LOC102221623 other downstream 4637259 18155145 ~ 18160086 (+)

Expression


Co-expression Network