tha1 (LOC108274193,LOC108426437,LOC102310306,LOC107683136,LOC107722240,LOC107581676)


Basic Information

Item Value
gene id tha1
gene name LOC108274193,LOC108426437,LOC102310306,LOC107683136,LOC107722240,LOC107581676
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 14013573 ~ 14034143 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU232344
CAAAACagagggagaagaggaggaaaaggggGAAGGGGATCAATGGAGGTACAAGGACATCTTTGACAGTGAGGGGtagaaaacacagaaatagattaaaatggtgaggagaggagagggggaCAGGAGAGTCACAGGGCAAGACCTAATTTAGGATGAAGGAAAGAAGACAAAGAGACCGTGAGAAAGTTAATCCAATTttgtgtcagaaaaaaaacgGCTCAGCTGAGAGAGGTCCAGCACATTTCTGAAGCATGTACAGAGCAAGTATGTGggcaaacacacatgcacacccacacacatgcaaagaCAAGAAACTGTGTAACTGTGGGTTTCTTTCCTCACTTACATAACTGATTAAAAGGAAACTGTCATCATCTTCTACCTCGACTTCTGCTCGAAGCTTCTGcaccttctgctgctgtggatggtaccacagaGATACCCTAAAGATTGCACGCTCCAAAAATCTTTGTGTCCAAGACTCACCCTTTCTTCTGTGGATAATGTCATGTGGACACTGTACATTTGTACCCAAGAACTGcttctgtaatcataaagactattgtataatgatttataatcccattttccggtgtcacccagaaaaAGGTGGGTTATCTTTtgagtctgtttcctctcagggtttcttcctAATGCCATCTgatggagtttttccttgccattgttgcctctggcttgttgAGTAGAGAGCTAAATATACATCTtcatcctgatttctgtaaagctccaTTGTAAGAATGTCTATtgataaaagtgctatacaaataaaattaaattgaattgaatcaacaTTGTTAATGTtgatttaacattaattaaaattaattaaaattatttaattaacaa
>XM_026914595.2
CAGGAACACggcagacctggcaacccagGTTATCGATGATTCATGCTCCATTGTGCATGTCTGGATTTACAAACAGTTTATAGTGAACGATTATCGAATGCAGCAACACAAAGTTGAAGTTTTTAGTAAAGAGTAGGTTTTATTCTGAAACTTTGCTAACAAGATGTCCGTTTCAGTTCGGTCACTTGTGCGTTGTGTGAAGTTCCGCTGGGTCTCAGAGCGAATATACAGCGGGCATATGCGTGTAGCGGATCAGGTGAGGCTTTACCGCGCCGGCAGCGCGGCGGCTCGCGGCTCAGGCGCCTGGCACACGGTGGACCTGCGCAGTGACACGGTGACTGAGCCGGGACAAGCCATGCGCAGCGCCATGGCACAGGCCAGGGTCGGAGATGATGTGTTCGGTGAAGACCCCACCGTTAATGaactGCAGACAGTGGCGGCTGATATGTTTGGCATGGAGGCAGCTTTGTTTGTACCCACAGGAACCATGAGCAATTTGATTGCAGtcatGGTGCACTGCAGAGAGAGGGGCGATGAGATGATAGTGGGGGATCTCTCTCATCTGCACATCTATGAGCAGGGAGGGAGTGCACAGCTTGCTGGTGTACACTCCACCACACTCACGACTCTGGCTGATGGAACGTTTGATCTGGAGCAGCTGGAATCAAAGATCCGCCATGACTATCCTGATGCGCATTACCCCCGCTCACGCCTGGTGTGtgtagaaaacacacacaacatcatgGGTGGACGCGTTCTCCCTGTCTCCTTCCTGCAGCAGCTGCGCTCTATAGCAGATAAGTATGGACTTGCTGTGCATATGGATGGTGCAAGGCTGATGAATGCAGCAGTGGCACTGGGTGTGCATCCCTCTGCTTTACTCAAACACTGCCACacggtcagtgtgtgtctgtctaagGGATTGGGAGCACCTGCTGGTACCATGCTTGCTGGGTCTAAAGAGTTCATCCAGAGAGCAGTGCGTGCTCGTAAAGCCCTGGGAGGTGGAATGCGCCAGTCAGGTATTTTAGCAGCAGCTGGAAAGATTGCCCTGTTGGACATGATGGCTAGACTAGAGGAGGACCACAGGAATGCCAGGACCTTTGCCAGAGCTTTGACAGAATGTGATCCTCCTTTGTACCATGTGGACTTGGCTTCTGTTGAAACCAACATCGTGCGTTTCTGTTTGCGAGTTCCTGGACTGAGTCCGTCTCATTTCTGTGAGCTGATGGAGGAGGTGAGCGAGGAGGAGATTGACGCTCTGGACCAGGGTGTACGTGTGCTCATGTTCCCTCACGTCAGAGGAACAGTGAGAGCTGTGTGGCACCTCGGCATCAGCGAGGAGGACACTCAGCTAGCTATAAAGAAGGCCCAGTTTGTGGCCCAACAATTTAGGATAAAATCAGCAAGAGACAGATGAAAGCAAGGGAAGAATCTtcaatcatcatcattgtcCCTTCAATTAAGAAGTGCTATGAAGCATTCTGAACCAAATTAGCAAACATTTGTATTACACACCATTTGTATTAAACTCTATTAAATCAATTACATTTCactagaataataataatttatatttcgATTGGAATAGTGATATATAAAATGAAGGTTTATATAAATCTTTCAGTCTAATTTATAGATACAGCAATTCATGTGGATTTGAAATAATACAGAATTTTACACATTGTCTCATTGGCCTATATAAATAAGcaattgtttatatataaaaccatatTGTTTGGTTGCTAGATAGCATTTCAACACATGCTAACTTGTTAAAGACATCTGAGGATGGAATAATGTCATTTGAGACTTAATACCCAATTCtaatataatgtacattattaCATACAGTAATTTTTTAACGTAACAGCGACATATGGTTATTACTGTAAGCTTCAAATTATATTAGTCCATGTTTTATataagtctgagaccactagtgaaaatgcttctattttgcgtTCTTTTCTAATTTCAAAGAAGcgttgaaatatttacatgatttacagcatttcttagtatttggtacgttCCATTTTTGCGTaatgagctggcatggactccacaagtttgtgcaaaaccctATGATACA
>XM_034309653.1
TCAATGGAGGTACAAGGACATCTTTGACAGTGAGGGGtagaaaacacagaaatagattaaaatggtgaggagaggagagggggaCAGGAGAGTCACAGGGCAAGACCTAATTTAGGATGAAGGAAAGAAGACAAAGAGACCGTGAGAAAGTTAATCCAATTttgtgtcagaaaaaaaacgGCTCAGCTGAGAGAGGTCCAGCACATTTCTGAAGCATGTACAGAGCAAaactGCAGACAGTGGCGGCTGATATGTTTGGCATGGAGGCAGCTTTGTTTGTACCCACAGGAACCATGAGCAATTTGATTGCAGtcatGGTGCACTGCAGAGAGAGGGGCGATGAGATGATAGTGGGGGATCTCTCTCATCTGCACATCTATGAGCAGGGAGGGAGTGCACAGCTTGCTGGTGTACACTCCACCACACTCACGACTCTGGCTGATGGAACGTTTGATCTGGAGCAGCTGGAATCAAAGATCCGCCATGACTATCCTGATGCGCATTACCCCCGCTCACGCCTGGTGTGtgtagaaaacacacacaacatcatgGGTGGACGCGTTCTCCCTGTCTCCTTCCTGCAGCAGCTGCGCTCTATAGCAGATAAGTATGGACTTGCTGTGCATATGGATGGTGCAAGGCTGATGAATGCAGCAGTGGCACTGGGTGTGCATCCCTCTGCTTTACTCAAACACTGCCACacggtcagtgtgtgtctgtctaagGGATTGGGAGCACCTGCTGGTACCATGCTTGCTGGGTCTAAAGAGTTCATCCAGAGAGCAGTGCGTGCTCGTAAAGCCCTGGGAGGTGGAATGCGCCAGTCAGGTATTTTAGCAGCAGCTGGAAAGATTGCCCTGTTGGACATGATGGCTAGACTAGAGGAGGACCACAGGAATGCCAGGACCTTTGCCAGAGCTTTGACAGAATGTGATCCTCCTTTGTACCATGTGGACTTGGCTTCTGTTGAAACCAACATCGTGCGTTTCTGTTTGCGAGTTCCTGGACTGAGTCCGTCTCATTTCTGTGAGCTGATGGAGGAGGTGAGCGAGGAGGAGATTGACGCTCTGGACCAGGGTGTACGTGTGCTCATGTTCCCTCACGTCAGAGGAACAGTGAGAGCTGTGTGGCACCTCGGCATCAGCGAGGAGGACACTCAGCTAGCTATAAAGAAGGCCCAGTTTGTGGCCCAACAATTTAGGATAAAATCAGCAAGAGACAGATGAAAGCAAGGGAAGAATCTtcaatcatcatcattgtcCCTTCAATTAAGAAGTGCTATGAAGCATTCTGAACCAAATTAGCAAACATTTGTATTACACACCATTTGTATTAAACTCTATTAAATCAATTACATTTCactagaataataataatttatatttcgATTGGAATAGTGATATATAAAATGAAGGTTTATATAAATCTTTCAGTCTAATTTATAGATACAGCAATTCATGTGGATTTGAAATAATACAGAATTTTACACATTGTCTCATTGGCCTATATAAATAAGcaattgtttatatataaaaccatatTGTTTGGTTGCTAGATAGCATTTCAACACATGCTAACTTGTTAAAGACATCTGAGGATGGAATAATGTCATTTGAGACTTAATACCCAATTCtaatataatgtacattattaCATACAGTAATTTTTTAACGTAACAGCGACATATGGTTATTACTGTAAGCTTCAAATTATATTAGTCCATGTTTTATataagtctgagaccactagtgaaaatgcttctattttgcgtTCTTTTCTAATTTCAAAGAAGcgttgaaatatttacatgatttacagcatttcttagtatttggtacgttCCATTTTTGCGTaatgagctggcatggactccacaagtttgtgcaaaaccctATGATACA

Function

NR:

description
probable low-specificity L-threonine aldolase 2

GO:

id name namespace
GO:0006520 cellular amino acid metabolic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0016829 lyase activity molecular_function

KEGG:

id description
K01620 ltaE; threonine aldolase

RNA

RNA id representative length rna type GC content exon number start site end site
TU232344 False 870 lncRNA 0.39 2 14013573 14016247
XM_026914595.2 True 2095 mRNA 0.45 7 14022576 14034143
XM_034309653.1 False 1901 mRNA 0.43 8 14013612 14034143

Neighbor

gene id symbol gene type direction distance location
socs3b socs3b,LOC108274104,LOC108426520,LOC107755481,LOC107601442,LOC107690914,LOC107581599,LOC107684082,LOC107722230 coding upstream 17404 13992223 ~ 13996169 (+)
LOC113527468 dnah17 coding upstream 38980 13933904 ~ 13974593 (+)
cyth1b LOC108274176,LOC108426518,LOC103022618,LOC107755486,LOC107690912 coding upstream 80154 13888509 ~ 13933419 (+)
sfxn2 sfxn2,LOC107755483,LOC107722238 coding upstream 142569 13861384 ~ 13871004 (+)
trim8b trim8,trim8b,LOC107581594,LOC107684075,LOC107565801 coding upstream 164894 13837408 ~ 13848679 (+)
slc38a10 slc38a10 coding downstream 174756 14208899 ~ 14233287 (+)
tepsin tepsin,LOC105892758 coding downstream 203249 14237392 ~ 14246149 (+)
si:dkey-21c1.4 LOC108273792 coding downstream 216322 14250465 ~ 14253655 (+)
tbcc tbcc coding downstream 231203 14265346 ~ 14266594 (+)
prph2a prph2,prph2a,LOC107581607,LOC107601435,LOC107684088 coding downstream 234533 14268676 ~ 14271524 (+)
G195994 NA non-coding upstream 317812 13693715 ~ 13695761 (+)
G195857 NA non-coding upstream 394634 13618664 ~ 13618939 (+)
G195847 NA non-coding upstream 495687 13514676 ~ 13517886 (+)
G195839 NA non-coding upstream 546590 13466765 ~ 13466983 (+)
LOC113527319 NA non-coding upstream 946951 13063864 ~ 13066622 (+)
G196265 NA non-coding downstream 92375 14126518 ~ 14127031 (+)
G196289 NA non-coding downstream 129428 14163571 ~ 14166015 (+)
G196292 NA non-coding downstream 135165 14169308 ~ 14169812 (+)
G196291 NA non-coding downstream 139147 14173290 ~ 14173773 (+)
G196294 NA non-coding downstream 156696 14190839 ~ 14191913 (+)
tcf7l2 tcf7l2 other upstream 454488 13483301 ~ 13559085 (+)
ablim1b ablim1,ablim1b,LOC107565789,LOC107689952,LOC107755543 other upstream 991578 12958935 ~ 13021995 (+)
LOC113527673 LOC108273669,LOC108273679 other upstream 1539590 12472679 ~ 12473983 (+)
LOC113527436 uts2r,LOC108273405,LOC108426413,LOC107754100,LOC107689263,LOC107552777 other upstream 1928214 12062808 ~ 12085359 (+)
tmem106a tmem106a other upstream 2392304 11613899 ~ 11621269 (+)
qki2 qki2,LOC108426533,LOC108274051,LOC103029551,LOC107690925,LOC107755469 other downstream 253216 14287359 ~ 14324281 (+)
anapc16 anapc16,cj104 other downstream 2821546 16855689 ~ 16863495 (+)
mta3 LOC108273982,LOC108430512,LOC107582777,LOC107728718,LOC107698822 other downstream 3511650 17545793 ~ 17572065 (+)
pde6gb pde6g,LOC102781464,LOC103367935,LOC102221623 other downstream 4121002 18155145 ~ 18160086 (+)
G198737 ppp2r2d,LOC107706599,LOC107653113,LOC107582184,LOC107553689 other downstream 4407743 18441886 ~ 18510159 (+)

Expression


Co-expression Network