G196202


Basic Information

Item Value
gene id G196202
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 14023587 ~ 14043932 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU232348
aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacatttcagggtCCGGTCCAAATAAAGTCTACAGACAGgctatatacacatatatacaaactTCATTATTTCAGATGAGTCGATTACCCAAGAGAGATCAAATTAAGGACAGATTGAAATAATGTGTCTTGTGAAAAGCAATAACAGCAGTGGTGTCTGTTATCTTCATTCTTCACCCATGGCAGACTGGATAATCTGTCCTCTTTTCAACTTCACAGCTTCTTCAAATTTGTCAATGGCCTGGCCGCACatctt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU232348 True 294 lncRNA 0.34 2 14023587 14043932

Neighbor

gene id symbol gene type direction distance location
socs3b socs3b,LOC108274104,LOC108426520,LOC107755481,LOC107601442,LOC107690914,LOC107581599,LOC107684082,LOC107722230 coding upstream 27418 13992223 ~ 13996169 (+)
LOC113527468 dnah17 coding upstream 48994 13933904 ~ 13974593 (+)
cyth1b LOC108274176,LOC108426518,LOC103022618,LOC107755486,LOC107690912 coding upstream 90168 13888509 ~ 13933419 (+)
sfxn2 sfxn2,LOC107755483,LOC107722238 coding upstream 152583 13861384 ~ 13871004 (+)
trim8b trim8,trim8b,LOC107581594,LOC107684075,LOC107565801 coding upstream 174908 13837408 ~ 13848679 (+)
slc38a10 slc38a10 coding downstream 164967 14208899 ~ 14233287 (+)
tepsin tepsin,LOC105892758 coding downstream 193460 14237392 ~ 14246149 (+)
si:dkey-21c1.4 LOC108273792 coding downstream 206533 14250465 ~ 14253655 (+)
tbcc tbcc coding downstream 221414 14265346 ~ 14266594 (+)
prph2a prph2,prph2a,LOC107581607,LOC107601435,LOC107684088 coding downstream 224744 14268676 ~ 14271524 (+)
G195994 NA non-coding upstream 327826 13693715 ~ 13695761 (+)
G195857 NA non-coding upstream 404648 13618664 ~ 13618939 (+)
G195847 NA non-coding upstream 505701 13514676 ~ 13517886 (+)
G195839 NA non-coding upstream 556604 13466765 ~ 13466983 (+)
LOC113527319 NA non-coding upstream 956965 13063864 ~ 13066622 (+)
G196265 NA non-coding downstream 82586 14126518 ~ 14127031 (+)
G196289 NA non-coding downstream 119639 14163571 ~ 14166015 (+)
G196292 NA non-coding downstream 125376 14169308 ~ 14169812 (+)
G196291 NA non-coding downstream 129358 14173290 ~ 14173773 (+)
G196294 NA non-coding downstream 146907 14190839 ~ 14191913 (+)
tcf7l2 tcf7l2 other upstream 464502 13483301 ~ 13559085 (+)
ablim1b ablim1,ablim1b,LOC107565789,LOC107689952,LOC107755543 other upstream 1001592 12958935 ~ 13021995 (+)
LOC113527673 LOC108273669,LOC108273679 other upstream 1549604 12472679 ~ 12473983 (+)
LOC113527436 uts2r,LOC108273405,LOC108426413,LOC107754100,LOC107689263,LOC107552777 other upstream 1938228 12062808 ~ 12085359 (+)
tmem106a tmem106a other upstream 2402318 11613899 ~ 11621269 (+)
qki2 qki2,LOC108426533,LOC108274051,LOC103029551,LOC107690925,LOC107755469 other downstream 243427 14287359 ~ 14324281 (+)
anapc16 anapc16,cj104 other downstream 2811757 16855689 ~ 16863495 (+)
mta3 LOC108273982,LOC108430512,LOC107582777,LOC107728718,LOC107698822 other downstream 3501861 17545793 ~ 17572065 (+)
pde6gb pde6g,LOC102781464,LOC103367935,LOC102221623 other downstream 4111213 18155145 ~ 18160086 (+)
G198737 ppp2r2d,LOC107706599,LOC107653113,LOC107582184,LOC107553689 other downstream 4397954 18441886 ~ 18510159 (+)

Expression


Co-expression Network