G196294


Basic Information

Item Value
gene id G196294
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 14190839 ~ 14191913 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU232456
caTTTAACCCTAACTTTGTCATactaatgtattattatatgatAATGCTGTATTTTGAATAGGATTTCTGTGTTGTGACTGAAAGAAATGTTGTTAATAGGCAGTAATGTGTAATAGTTTCATTTCAGTCTTGTAATAACTTCTCTAACATAGACCTAATTATGAATAAGCCATTAGGACAACATTAGAAATCAAAATTTGTGATTAACTATTCTACATATGATGTAAACTGCTCTTATTGGCAAGAAtgttcttagaaaaaaagggggtTCTTTATGGGTTCATTGAATAATTAAGGATTCTCCCAAATGGGTTCTAGCTGTaaccctttctgatagagaaacactctgttgtaggttctatatagaacttTTATGGGTTCTTCCAGAGAGACaattttctaaaagtgtagaACTACTTCTGAAAATAGCTAATCCACTTTCTATAATGCAGCAATAATGAAAATTGCTATaagatacattttattaatattaattataatcatCGGCTGGgcattattgttgttgttgttgttaatttttttcgCATTCTGCAcagattctttaaaaaaacaagaacaaatgagcacacacacacacatacacacaatattgAGTTTTGTGAGTGTAGTTAAGCAGAACAGTCAGGGCTGCAGTGCAGCATCGTGTGTGTGAACTTAATTCATGATGACTAGAGCAGGAGGGGGAGCTTTGCAGTATGACCATGAGCACGCCGATAACAACACAACCAATAATCCTGAAGGAAAAGTCTCAACGCAAAGTAAATCAACAGTAGttgcattaataatattattaggcCTTGTCATCTTTAATATAAAAGTCCAGCACTGTTTGCTCTTGTACAATCTTTCATGCTTGTCCAACTGAACGTTTCCTTCACCAAACTCTTGGAGTGCATCATGAGAAAAAGACGAGTTTACACACGTGGCTGCTAACAGAGGAGCCTGAGAGGAGTTGGACTGTAGATTAGTGATGGGCGAGAACGCATGTGGATTACATGTTACCTAATGTGGACTCAGTACTGTCCTGGGTGGAATAAACCATATACTTACAAA

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0006364 rRNA processing biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0044423 virion part cellular_component
GO:0019012 virion cellular_component
GO:0019013 viral nucleocapsid cellular_component
GO:0019028 viral capsid cellular_component

KEGG:

id description
ko03008 Ribosome biogenesis in eukaryotes
ko03060 Protein export
ko04141 Protein processing in endoplasmic reticulum

RNA

RNA id representative length rna type GC content exon number start site end site
TU232456 True 1075 lncRNA 0.35 1 14190839 14191913

Neighbor

gene id symbol gene type direction distance location
socs3b socs3b,LOC108274104,LOC108426520,LOC107755481,LOC107601442,LOC107690914,LOC107581599,LOC107684082,LOC107722230 coding upstream 194670 13992223 ~ 13996169 (+)
LOC113527468 dnah17 coding upstream 216246 13933904 ~ 13974593 (+)
cyth1b LOC108274176,LOC108426518,LOC103022618,LOC107755486,LOC107690912 coding upstream 257420 13888509 ~ 13933419 (+)
sfxn2 sfxn2,LOC107755483,LOC107722238 coding upstream 319835 13861384 ~ 13871004 (+)
trim8b trim8,trim8b,LOC107581594,LOC107684075,LOC107565801 coding upstream 342160 13837408 ~ 13848679 (+)
slc38a10 slc38a10 coding downstream 16986 14208899 ~ 14233287 (+)
tepsin tepsin,LOC105892758 coding downstream 45479 14237392 ~ 14246149 (+)
si:dkey-21c1.4 LOC108273792 coding downstream 58552 14250465 ~ 14253655 (+)
tbcc tbcc coding downstream 73433 14265346 ~ 14266594 (+)
prph2a prph2,prph2a,LOC107581607,LOC107601435,LOC107684088 coding downstream 76763 14268676 ~ 14271524 (+)
G196291 NA non-coding upstream 17066 14173290 ~ 14173773 (+)
G196292 NA non-coding upstream 21027 14169308 ~ 14169812 (+)
G196289 NA non-coding upstream 24824 14163571 ~ 14166015 (+)
G196265 NA non-coding upstream 63808 14126518 ~ 14127031 (+)
G196202 NA non-coding upstream 146907 14023587 ~ 14043932 (+)
G196307 NA non-coding downstream 72263 14264176 ~ 14264386 (+)
LOC117598693 NA non-coding downstream 88321 14280234 ~ 14287826 (+)
G196312 NA non-coding downstream 135189 14327102 ~ 14327360 (+)
G196315 NA non-coding downstream 146050 14337963 ~ 14338270 (+)
G196360 NA non-coding downstream 331992 14523905 ~ 14526083 (+)
tha1 LOC108274193,LOC108426437,LOC102310306,LOC107683136,LOC107722240,LOC107581676 other upstream 156696 14013573 ~ 14034143 (+)
tcf7l2 tcf7l2 other upstream 631754 13483301 ~ 13559085 (+)
ablim1b ablim1,ablim1b,LOC107565789,LOC107689952,LOC107755543 other upstream 1168844 12958935 ~ 13021995 (+)
LOC113527673 LOC108273669,LOC108273679 other upstream 1716856 12472679 ~ 12473983 (+)
LOC113527436 uts2r,LOC108273405,LOC108426413,LOC107754100,LOC107689263,LOC107552777 other upstream 2105480 12062808 ~ 12085359 (+)
qki2 qki2,LOC108426533,LOC108274051,LOC103029551,LOC107690925,LOC107755469 other downstream 95446 14287359 ~ 14324281 (+)
anapc16 anapc16,cj104 other downstream 2663776 16855689 ~ 16863495 (+)
mta3 LOC108273982,LOC108430512,LOC107582777,LOC107728718,LOC107698822 other downstream 3353880 17545793 ~ 17572065 (+)
pde6gb pde6g,LOC102781464,LOC103367935,LOC102221623 other downstream 3963232 18155145 ~ 18160086 (+)
G198737 ppp2r2d,LOC107706599,LOC107653113,LOC107582184,LOC107553689 other downstream 4249973 18441886 ~ 18510159 (+)

Expression


Co-expression Network