G196307


Basic Information

Item Value
gene id G196307
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 14264176 ~ 14264386 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU232472
gaatgactggtctgaactgacaggaagtctgtagtaactcagataagcactctttacaaccgtattgagcagaaatgcatctcgGAACACACAACttatcaaaccttgaggtagatgggctacaacagcagaagaccacatcagcttccactcctgtcagccaaaaacaagaatctgaggctatcatgggcgcAAACTCAaattggacagc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU232472 True 211 lncRNA 0.45 1 14264176 14264386

Neighbor

gene id symbol gene type direction distance location
si:dkey-21c1.4 LOC108273792 coding upstream 10521 14250465 ~ 14253655 (+)
tepsin tepsin,LOC105892758 coding upstream 18027 14237392 ~ 14246149 (+)
slc38a10 slc38a10 coding upstream 30889 14208899 ~ 14233287 (+)
socs3b socs3b,LOC108274104,LOC108426520,LOC107755481,LOC107601442,LOC107690914,LOC107581599,LOC107684082,LOC107722230 coding upstream 268007 13992223 ~ 13996169 (+)
LOC113527468 dnah17 coding upstream 289583 13933904 ~ 13974593 (+)
tbcc tbcc coding downstream 960 14265346 ~ 14266594 (+)
prph2a prph2,prph2a,LOC107581607,LOC107601435,LOC107684088 coding downstream 4290 14268676 ~ 14271524 (+)
timm23a timm23,timm23a,LOC108426535,LOC107690962,LOC107684090,LOC107749852,LOC107561858 coding downstream 66033 14330419 ~ 14334549 (+)
syt15 LOC108273430 coding downstream 85447 14349833 ~ 14354606 (+)
si:ch73-127m5.1 si:ch73-127m5.1,LOC108273477,LOC108410513,LOC107690930,LOC107755465,LOC107684096,LOC107749846 coding downstream 105324 14369710 ~ 14391752 (+)
G196294 NA non-coding upstream 72263 14190839 ~ 14191913 (+)
G196291 NA non-coding upstream 90403 14173290 ~ 14173773 (+)
G196292 NA non-coding upstream 94364 14169308 ~ 14169812 (+)
G196289 NA non-coding upstream 98161 14163571 ~ 14166015 (+)
G196265 NA non-coding upstream 137145 14126518 ~ 14127031 (+)
LOC117598693 NA non-coding downstream 15848 14280234 ~ 14287826 (+)
G196312 NA non-coding downstream 62716 14327102 ~ 14327360 (+)
G196315 NA non-coding downstream 73577 14337963 ~ 14338270 (+)
G196360 NA non-coding downstream 259519 14523905 ~ 14526083 (+)
G196378 NA non-coding downstream 313520 14577906 ~ 14578458 (+)
tha1 LOC108274193,LOC108426437,LOC102310306,LOC107683136,LOC107722240,LOC107581676 other upstream 230033 14013573 ~ 14034143 (+)
tcf7l2 tcf7l2 other upstream 705091 13483301 ~ 13559085 (+)
ablim1b ablim1,ablim1b,LOC107565789,LOC107689952,LOC107755543 other upstream 1242181 12958935 ~ 13021995 (+)
LOC113527673 LOC108273669,LOC108273679 other upstream 1790193 12472679 ~ 12473983 (+)
LOC113527436 uts2r,LOC108273405,LOC108426413,LOC107754100,LOC107689263,LOC107552777 other upstream 2178817 12062808 ~ 12085359 (+)
qki2 qki2,LOC108426533,LOC108274051,LOC103029551,LOC107690925,LOC107755469 other downstream 22973 14287359 ~ 14324281 (+)
anapc16 anapc16,cj104 other downstream 2591303 16855689 ~ 16863495 (+)
mta3 LOC108273982,LOC108430512,LOC107582777,LOC107728718,LOC107698822 other downstream 3281407 17545793 ~ 17572065 (+)
pde6gb pde6g,LOC102781464,LOC103367935,LOC102221623 other downstream 3890759 18155145 ~ 18160086 (+)
G198737 ppp2r2d,LOC107706599,LOC107653113,LOC107582184,LOC107553689 other downstream 4177500 18441886 ~ 18510159 (+)

Expression


Co-expression Network