G196312


Basic Information

Item Value
gene id G196312
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 14327102 ~ 14327360 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU232479
AAAcatgcagctataaacacatgAAAGAAGATGGAGCAGCAGGGTGGTGTTGCATGCTGGTCTATGTCCCATTCCCCTCTGTATACTTCTccactcctcttcctctcctcgtCTTCCTGCCCTTCCTGCCCACTCTCAGGAGGGGGAATCAGCAGTCTGGCTCCAGTCTGGACCCCCACTCTGGCTCCTCAGTCCTGGACACTACCCAAACCTAGTGGGAGACAAGCGACTGCAGTCAGCATCCAATAGTCCAGAGGAG

Function

GO: NA

KEGG:

id description
ko00100 Steroid biosynthesis

RNA

RNA id representative length rna type GC content exon number start site end site
TU232479 True 259 lncRNA 0.54 1 14327102 14327360

Neighbor

gene id symbol gene type direction distance location
prph2a prph2,prph2a,LOC107581607,LOC107601435,LOC107684088 coding upstream 55578 14268676 ~ 14271524 (+)
tbcc tbcc coding upstream 60508 14265346 ~ 14266594 (+)
si:dkey-21c1.4 LOC108273792 coding upstream 73447 14250465 ~ 14253655 (+)
tepsin tepsin,LOC105892758 coding upstream 80953 14237392 ~ 14246149 (+)
slc38a10 slc38a10 coding upstream 93815 14208899 ~ 14233287 (+)
timm23a timm23,timm23a,LOC108426535,LOC107690962,LOC107684090,LOC107749852,LOC107561858 coding downstream 3059 14330419 ~ 14334549 (+)
syt15 LOC108273430 coding downstream 22473 14349833 ~ 14354606 (+)
si:ch73-127m5.1 si:ch73-127m5.1,LOC108273477,LOC108410513,LOC107690930,LOC107755465,LOC107684096,LOC107749846 coding downstream 42350 14369710 ~ 14391752 (+)
ndst2b ndst2b,LOC108273828,LOC108410510,LOC107684097,LOC107755463,LOC107749844 coding downstream 67354 14394714 ~ 14445832 (+)
hexdc hexdc coding downstream 213140 14540500 ~ 14546876 (+)
LOC117598693 NA non-coding upstream 39276 14280234 ~ 14287826 (+)
G196307 NA non-coding upstream 62716 14264176 ~ 14264386 (+)
G196294 NA non-coding upstream 135189 14190839 ~ 14191913 (+)
G196291 NA non-coding upstream 153329 14173290 ~ 14173773 (+)
G196292 NA non-coding upstream 157290 14169308 ~ 14169812 (+)
G196315 NA non-coding downstream 10603 14337963 ~ 14338270 (+)
G196360 NA non-coding downstream 196545 14523905 ~ 14526083 (+)
G196378 NA non-coding downstream 250546 14577906 ~ 14578458 (+)
G196386 NA non-coding downstream 270418 14597778 ~ 14601439 (+)
G196387 NA non-coding downstream 277943 14605303 ~ 14614657 (+)
qki2 qki2,LOC108426533,LOC108274051,LOC103029551,LOC107690925,LOC107755469 other upstream 2821 14287359 ~ 14324281 (+)
tha1 LOC108274193,LOC108426437,LOC102310306,LOC107683136,LOC107722240,LOC107581676 other upstream 292959 14013573 ~ 14034143 (+)
tcf7l2 tcf7l2 other upstream 768017 13483301 ~ 13559085 (+)
ablim1b ablim1,ablim1b,LOC107565789,LOC107689952,LOC107755543 other upstream 1305107 12958935 ~ 13021995 (+)
LOC113527673 LOC108273669,LOC108273679 other upstream 1853119 12472679 ~ 12473983 (+)
anapc16 anapc16,cj104 other downstream 2528329 16855689 ~ 16863495 (+)
mta3 LOC108273982,LOC108430512,LOC107582777,LOC107728718,LOC107698822 other downstream 3218433 17545793 ~ 17572065 (+)
pde6gb pde6g,LOC102781464,LOC103367935,LOC102221623 other downstream 3827785 18155145 ~ 18160086 (+)
G198737 ppp2r2d,LOC107706599,LOC107653113,LOC107582184,LOC107553689 other downstream 4114526 18441886 ~ 18510159 (+)
si:ch211-221j21.3 LOC108273429 other downstream 4478717 18806077 ~ 18812262 (+)

Expression


Co-expression Network