G196378


Basic Information

Item Value
gene id G196378
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 14577906 ~ 14578458 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU232554
gaatttatgatttgtccacccctggaAGCTTCAATTTTGTTACCATTAATGAGTCATAAACTATCAGCATTTGTGCTGTGTTTCGATTAATTAGACTCAGGGTTGAGGGAGAAATTTATAATGCAGTTTCTCTTAGTAACAGCTGTGCATTAAAGCAACATGGGGATGCATTTAAGCCATGAAGTTATGGGAAGTAGATCATGTTTGAGCATTTTTCTTCCTCACACTCAGAAATAACAAGGTTTGTATTGTCATTATCTGAAAGCAAAATCATTTATGACTGGATAAGTGTTAGCTTGTTACAGCATTTACAAGGAACTGTCACAAAGTCTCTGTACCTCAATGTTTAGTTTTATGTAATGCTATTTATAATATAGCATATGTTTAATGCATGAACTTTTGCAGCAATATATTTTGCCTGGTATGACAGTAAGTGTTTACTGAGGGAAATGAttctagccttttttttttaattgacaatatatttttattgagtGCACAACTTGAATAATGGAAGTAAACTAAATCTTTATGGATTATATATTGAACCTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU232554 True 553 lncRNA 0.32 1 14577906 14578458

Neighbor

gene id symbol gene type direction distance location
tap2t LOC108273873 coding upstream 235 14571593 ~ 14577671 (+)
slc16a5a slc16a5 coding upstream 7617 14560553 ~ 14570289 (+)
kctd2 kctd2,LOC107727321,LOC108410512,LOC107666921,LOC107582756 coding upstream 18981 14547948 ~ 14558925 (+)
hexdc hexdc coding upstream 31030 14540500 ~ 14546876 (+)
ndst2b ndst2b,LOC108273828,LOC108410510,LOC107684097,LOC107755463,LOC107749844 coding upstream 132074 14394714 ~ 14445832 (+)
acsf2 acsf2 coding downstream 8807 14587265 ~ 14609925 (+)
stxbp4 stxbp4 coding downstream 133872 14712330 ~ 14736267 (+)
hlfb LOC108273987 coding downstream 159798 14738256 ~ 14744868 (+)
ankfn1 ankfn1 coding downstream 177170 14755628 ~ 14823551 (+)
nog3 nog coding downstream 246777 14825235 ~ 14826880 (+)
G196360 NA non-coding upstream 51823 14523905 ~ 14526083 (+)
G196315 NA non-coding upstream 239636 14337963 ~ 14338270 (+)
G196312 NA non-coding upstream 250546 14327102 ~ 14327360 (+)
LOC117598693 NA non-coding upstream 290080 14280234 ~ 14287826 (+)
G196307 NA non-coding upstream 313520 14264176 ~ 14264386 (+)
G196386 NA non-coding downstream 19320 14597778 ~ 14601439 (+)
G196387 NA non-coding downstream 26845 14605303 ~ 14614657 (+)
G197174 NA non-coding downstream 688841 15267299 ~ 15268740 (+)
G197397 NA non-coding downstream 1126674 15705132 ~ 15714087 (+)
G197399 NA non-coding downstream 1143137 15721595 ~ 15722402 (+)
qki2 qki2,LOC108426533,LOC108274051,LOC103029551,LOC107690925,LOC107755469 other upstream 253625 14287359 ~ 14324281 (+)
tha1 LOC108274193,LOC108426437,LOC102310306,LOC107683136,LOC107722240,LOC107581676 other upstream 543763 14013573 ~ 14034143 (+)
tcf7l2 tcf7l2 other upstream 1018821 13483301 ~ 13559085 (+)
ablim1b ablim1,ablim1b,LOC107565789,LOC107689952,LOC107755543 other upstream 1555911 12958935 ~ 13021995 (+)
LOC113527673 LOC108273669,LOC108273679 other upstream 2103923 12472679 ~ 12473983 (+)
anapc16 anapc16,cj104 other downstream 2277231 16855689 ~ 16863495 (+)
mta3 LOC108273982,LOC108430512,LOC107582777,LOC107728718,LOC107698822 other downstream 2967335 17545793 ~ 17572065 (+)
pde6gb pde6g,LOC102781464,LOC103367935,LOC102221623 other downstream 3576687 18155145 ~ 18160086 (+)
G198737 ppp2r2d,LOC107706599,LOC107653113,LOC107582184,LOC107553689 other downstream 3863428 18441886 ~ 18510159 (+)
si:ch211-221j21.3 LOC108273429 other downstream 4227619 18806077 ~ 18812262 (+)

Expression


Co-expression Network