G196387


Basic Information

Item Value
gene id G196387
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 14605303 ~ 14614657 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU232567
TCACGGAGCGTAGAAGGCGTAGGAGTTGTGTATGAAAAGACGATTAATGAACCGTCTAATACTTCTCTTCTAAAAGATTACTGAATTTAACACTGCAACATGAAGCAGCACAAGCTGTCTGCAAAAAAGCGCCTTACCAAACCGCTTCTTTTCGGCACACTGATCGCAGGACTTGCAACAGCTTTCTACAACAGGCACTTGTTCTTTGAAGACGTGGAAGAGCTTCGAGCTCAGGAACGAGCTCGTAATGATGCCAAACGCTTAGAAGTGTTAGAAAGGAGGCAGAAACAAATAGAAGAGCTGGTGGAGAAGAGAAATGCAGGGAACAGTTGAAATCAGACATCTATGCAAGGACATATCTGCTCACCTGTGCTGAAAGCAGAAAAAACAGGGTGGCCACCATCTAACTGTCCAAAAAAATGATGATTGTATTCGGTGCAAAATCGGAGCTACACAAGATACAAGAACGTTACTCCAGTTAATAACACCCCCCTCTAACTAACTACCAAGAAGCTGTATCCCCTCAGTGGATTGAAAATTTAGATGAAAAGATGGACCATCACAAGAGCTATAATCTAACAGTATTTGTACTTCAACCACAGACTTGTGTTGGCTCGTGAATGTCAAACTGCTATTAAAAAATTGCTTGTATAAGATAAGCTCATACgatgctttttttctgtcacagTGACACATTGCCCTCATCATTAGCCCAGTACCTGCCAAGTgaga
>TU232568
AGATTAGTTCCGGGTTTATAGTGCAATTTTCTTAAAACTTAGTAAGCAGCCATGTAATGTTCGATGGCATGTGGGTGAAATGTAAATGGGTGAAACTCCAAAATGTATGCAACATATATTAAATCAACAGCAGAGATAAAAACACATTACGAAAATGGTCTCCGGAAGTAATGCGTACGTGTTTTGATGAACATCTCGAGGTCACGGAGCGTAGAAGGCGTAGGAGTTGTGTATGAAAAGACGATTAATGAACCGTCTAATACTTCTCTTCTAAAAGATTACTGAATTTAACACTGCAACATGAAGCAGCACAAGCTGTCTGCAAAAAAGCGCCTTACCAAACCGCTTCTTTTCGGCACACTGATCGCAGGACTTGCAACAGCTTTCTACAACAGGCACTTGTTCTTTGAAGACGTGGAAGAGCTTCGAGCTCAGGAACGAGCTCGTAATGATGCCAAACGCTTAGAAGTGTTAGAAAGGAGGCAGAAACAAATAGAAGAGCTGGTGGAGAAGAGAAATGCAGGGAACAGTTGAAATCAGACATCTATGCAAGGACATATCTGCTCACCTGTGCTGAAAGCAGAAAAAACAGGGTGGCCACCATCTAACTGTCCAAAAAAATGATGATTGTATTCGGTGCAAAATCGGAGCTACACAAGATACAAGAACGTTACTCCAGTTAATAACACCCCCCTCTAACTAACTACCAAGAAGCTGTATCCCCTCAGTGGATTGAAAATTTAGATGAAAAGATGGACCATCACAAGAGCTATAATCTAACAGTATTTGTACTTCAACCACAGACTTGTGTTGGCTCGTGAATGTCAAACTGCTATTAAAAAATTGCTTGTATAAGATAAGCTCATACgatgctttttttctgtcacagTGACACATTGCCCTCATCATTAGCCCAGTACCTGCCAAGTgaga
>TU232569
TCACGGAGCGTAGAAGGCGTAGGAGTTGTGTATGAAAAGACGATTAATGAACCGTCTAATACTTCTCTTCTAAAAGATTACTGAATTTAACACTGCAACATGAAGCAGCACAAGCTGTCTGCAAAAAAGCGCCTTACCAAACCGCTTCTTTTCGGCACACTGATCGCAGGACTTGCAACAGCTTTCTACAACAGGCACTTGTTCTTTGAAGACGTGGAAGAGCTTCGAGCTCAGGAACGAGCTCGTAATGATGCCAAACGCTTAGAAGTGTTAGAAAGGAGGCAGAAACAAATAGAAGAGCTGGTGGAGAAGAGAAATGCAGGGAACAGTTGAAATCAGACATCTATGCAAGGACATATCTGCTCACCTGTGCTGAAAGCAGAAAAAACAGGGTGGCCACCATCTAACTGTCCAAAAAAATGATGATTGTATTCGGTGCAAAATCGGAGCTACACAAGATACAAGAACGTTACTCCAGTTAATAACACCCCCCTCTAACTAACTACCAAGAAGCTGTATCCCCTCAGTGGATTGAAAATTTAGATGAAAAGATGGACCATCACAAGAGCTATAATCTAACAGTATTTGTACTTCAACCACAGACTTGTGTTGGCTCGTGAATGTCAAACTGCTATTAAAAAATTGCTTGTATAAGATAAGCTCATACgatgctttttttctgtcacagTGACACATTGCCCTCATCATTAGCCCAGTACCTGCCAAGTgagatatacatatatgtaaataaaaaaagtgtaaaaaaagacTTGTCTGCCTTTgtatgaaagaaaattaaatacattataaacattCAAAAGcctatttttacaaatatttggCAAAGGTTTTATGAAGATCTGCATTGTAAAACAGGAATTGATTTTCAGGCATTTGCAACATGTCTCTGTTCTAAAAATAAACCTTTG
>TU232570
AGATTAGTTCCGGGTTTATAGTGCAATTTTCTTAAAACTTAGTAAGCAGCCATGTAATGTTCGATGGCATGTGGGTGAAATGTAAATGGGTGAAACTCCAAAATGTATGCAACATATATTAAATCAACAGCAGAGATAAAAACACATTACGAAAATGGTCTCCGGAAGTAATGCGTACGTGTTTTGATGAACATCTCGAGGTCACGGAGCGTAGAAGGCGTAGGAGTTGTGTATGAAAAGACGATTAATGAACCGTCTAATACTTCTCTTCTAAAAGATTACTGAATTTAACACTGCAACATGAAGCAGCACAAGCTGTCTGCAAAAAAGCGCCTTACCAAACCGCTTCTTTTCGGCACACTGATCGCAGGACTTGCAACAGCTTTCTACAACAGGCACTTGTTCTTTGAAGACGTGGAAGAGCTTCGAGCTCAGGAACGAGCTCGTAATGATGCCAAACGCTTAGAAGTGTTAGAAAGGAGGCAGAAACAAATAGAAGAGCTGGTGGAGAAGAGAAATGCAGGGAACAGTTGAAATCAGACATCTATGCAAGGACATATCTGCTCACCTGTGCTGAAAGCAGAAAAAACAGGGTGGCCACCATCTAACTGTCCAAAAAAATGATGATTGTATTCGGTGCAAAATCGGAGCTACACAAGATACAAGAACGTTACTCCAGTTAATAACACCCCCCTCTAACTAACTACCAAGAAGCTGTATCCCCTCAGTGGATTGAAAATTTAGATGAAAAGATGGACCATCACAAGAGCTATAATCTAACAGTATTTGTACTTCAACCACAGACTTGTGTTGGCTCGTGAATGTCAAACTGCTATTAAAAAATTGCTTGTATAAGATAAGCTCATACgatgctttttttctgtcacagTGACACATTGCCCTCATCATTAGCCCAGTACCTGCCAAGTgagatatacatatatgtaaataaaaaaagtgtaaaaaaagacTTGTCTGCCTTTgtatgaaagaaaattaaatacattataaacattCAAAAGcctatttttacaaatatttggCAAAGGTTTTATGAAGATCTGCATTGTAAAACAGGAATTGATTTTCAGGCATTTGCAACATGTCTCTGTTCTAAAAATAAACCTTTG
>TU232571
TTAAATCAGTAGCAGAGATAAAAACACATTACGAAAATGGTCTCCGGAAGTAATGCGTACGTGTTTTGATGAACATCTCGAGGTCACGGAGCGTAGAAGGCGTAGGAGTTGTGTATGAAAAGACGATTAATGAACCGTCTAATACTTCTCTTCTAAAAGATTACTGAATTTAACACTGCAACATGAAGCAGCACAAGCTGTCTGCAAAAAAGCGCCTTACCAAACCGCTTCTTTTCGGCACACTGATCGCAGGACTTGCAACAGCTTTCTACAACAGGCACTTGTTCTTTGAAGACGTGGAAGAGCTTCGAGCTCAGGAACGAGCTCGTAATGATGCCAAACGCTTAGAAGTGTTAGAAAGGAGGCAGAAACAAATAGAAGAGCTGGTGGAGAAGAGAAATGCAGGGAACAGTTGAAATCAGACATCTATGCAAGGACATATCTGCTCACCTGTGCTGAAAGCAGAAAAAACAGGGTGGCCACCATCTAACTGTCCAAAAAAATGATGATTGTATTCGGTGCAAAATCGGAGCTACACAAGATACAAGAACGTTACTCCAGTTAATAACACCCCCCTCTAACTAACTACCAAGAAGCTGTATCCCCTCAGTGGATTGAAAATTTAGATGAAAAGATGGACCATCACAAGAGCTATAATCTAACAGTATTTGTACTTCAACCACAGACTTGTGTTGGCTCGTGAATGTCAAACTGCTATTAAAAAATTGCTTGTATAAGATAAGCTCATACgatgctttttttctgtcacagTGACACATTGCCCTCATCATTAGCCCAGTACCTGCCAAGTgaga
>TU232573
TCTGTCACAAGCCCCTGCAAATATTCCAACCTATCTGATGCACAGAATCGATCCATTCCTGTAGAACATCTGTAAAAATTAGGAGCAGAACGTATTTAAGTATCTGAAGGAGATGAAATGTCATAGCCAGGTTTCCTCTTAGGATTACTACGCAAAGCAGCCTTACacatttttgaaatgttattCCAACTAACACAAATTTCAGACTCGGTTTAAGTATATGGATAGATTTTAGATTAAATGCATGAATCAGAATGTATAGCAAACCCCCTAGTAAACAGGAAATCATCTAAAACACAGGTTTCCAACTCTGGTCTTTTAGTTCCCCTGTGATTTCTATGCTCCCAACATACACAGTGAtgaacagcacgtcctgaactGAAgttgaactctctctctctccccctccccctctctcccaccctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgatagggGTACTCCAGGTCCAAGGTTGGGAGCCTGTAATCTAGATTACACAGCTGCGCCCAAAAGATATTCTGCTAACTCTAAAAACGAATACGTTAATTCATTACATGAACGCAAATGCACAAAACCGGTTATAACAGTGTTGTTAAGAAATTTAAATCTTAACCGTTGTTTATACCCGTTTTTCGGTCCCTCCTGATGTGTCAGAATACCATTTTACGCATGCGTACTAGGACTCGTGAACAATTTACCAGCCCGAACATTTTTCTCTGCTGCGCACGTTAAATTAAAGGCACATCCGGTCCATCCAAAAAAAATATCCCCATGATTAGGTACACAAGATTAGTTCCGGGTTTATAGTGCAATTTTCTTAAAACTTAGTAAGCAGCCATGTAATGTTCGATGGCATGTGGGTGAAATGTAAATGGGTGAAACTCCAAAATGTATGCAACATATATTAAATCAACAGCAGAGATAAAAACACATTACGAAAATGGTCTCCGGAAGTAATGCGTACGTGTTTTGATGAACATCTCGAGGTCACGGAGCGTAGAAGGCGTAGGAGTTGTGTATGAAAAGACGATTAATGAACCGTCTAATACTTCTCTTCTAAAAGATTACTGAATTTAACACTGCAACATGAAGCAGCACAAGCTGTCTGCAAAAAAGCGCCTTACCAAACCGCTTCTTTTCGGCACACTGATCGCAGGACTTGCAACAGCTTTCTACAACAGGCACTTGTTCTTTGAAGACGTGGAAGAGCTTCGAGCTCAGGAACGAGCTCGTAATGATGCCAAACGCTTAGAAGTGTTAGAAAGGAGGCAGAAACAAATAGAAGAGCTGGTGGAGAAGAGAAATGCAGGGAACAGTTGAAATCAGACATCTATGCAAGGACATATCTGCTCACCTGTGCTGAAAGCAGAAAAAACAGGGTGGCCACCATCTAACTGTCCAAAAAAATGATGATTGTATTCGGTGCAAAATCGGAGCTACACAAGATACAAGAACGTTACTCCAGTTAATAACACCCCCCTCTAACTAACTACCAAGAAGCTGTATCCCCTCAGTGGATTGAAAATTTAGATGAAAAGATGGACCATCACAAGAGCTATAATCTAACAGTATTTGTACTTCAACCACAGACTTGTGTTGGCTCGTGAATGTCAAACTGCTATTAAAAAATTGCTTGTATAAGATAAGCTCATACgatgctttttttctgtcacagTGACACATTGCCCTCATCATTAGCCCAGTACCTGCCAAGTgagatatacatatatgtaaataaaaaaagtgtaaaaaaagacTTGTCTGCCTTTgtatgaaagaaaattaaatacattataaacattCAAAAGcctatttttacaaatatttggCAAAGGTTTTATGAAGATCTGCATTGTAAAACAGGAATTGATTTTCAGGCATTTGCAACATGTCTCTGTTCTAAAAATAAACCTTTG

Function

GO:

id name namespace
GO:0006091 generation of precursor metabolites and energy biological_process
GO:0042773 ATP synthesis coupled electron transport biological_process
GO:0006119 oxidative phosphorylation biological_process
GO:0022900 electron transport chain biological_process
GO:0022904 respiratory electron transport chain biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0015980 energy derivation by oxidation of organic compounds biological_process
GO:0045333 cellular respiration biological_process
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function
GO:0003954 NADH dehydrogenase activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0050136 NADH dehydrogenase (quinone) activity molecular_function
GO:0016651 oxidoreductase activity, acting on NAD(P)H molecular_function
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor molecular_function

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04260 Cardiac muscle contraction
ko04723 Retrograde endocannabinoid signaling
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

RNA

RNA id representative length rna type GC content exon number start site end site
TU232567 False 732 lncRNA 0.42 2 14613289 14614460
TU232568 False 933 lncRNA 0.41 2 14613088 14614460
TU232569 False 929 lncRNA 0.39 2 14613289 14614657
TU232570 False 1130 lncRNA 0.38 2 14613088 14614657
TU232571 False 815 lncRNA 0.42 3 14605303 14614460
TU232573 True 1925 lncRNA 0.39 2 14612293 14614657

Neighbor

gene id symbol gene type direction distance location
tap2t LOC108273873 coding upstream 27632 14571593 ~ 14577671 (+)
slc16a5a slc16a5 coding upstream 35014 14560553 ~ 14570289 (+)
kctd2 kctd2,LOC107727321,LOC108410512,LOC107666921,LOC107582756 coding upstream 46378 14547948 ~ 14558925 (+)
hexdc hexdc coding upstream 58427 14540500 ~ 14546876 (+)
ndst2b ndst2b,LOC108273828,LOC108410510,LOC107684097,LOC107755463,LOC107749844 coding upstream 159471 14394714 ~ 14445832 (+)
stxbp4 stxbp4 coding downstream 97673 14712330 ~ 14736267 (+)
hlfb LOC108273987 coding downstream 123599 14738256 ~ 14744868 (+)
ankfn1 ankfn1 coding downstream 140971 14755628 ~ 14823551 (+)
nog3 nog coding downstream 210578 14825235 ~ 14826880 (+)
rbfox3a LOC108273414,LOC108435270,LOC107566522,LOC107755508,LOC107581581 coding downstream 278567 14893224 ~ 15220705 (+)
G196386 NA non-coding upstream 3864 14597778 ~ 14601439 (+)
G196378 NA non-coding upstream 26845 14577906 ~ 14578458 (+)
G196360 NA non-coding upstream 79220 14523905 ~ 14526083 (+)
G196315 NA non-coding upstream 267033 14337963 ~ 14338270 (+)
G196312 NA non-coding upstream 277943 14327102 ~ 14327360 (+)
G197174 NA non-coding downstream 652642 15267299 ~ 15268740 (+)
G197397 NA non-coding downstream 1090475 15705132 ~ 15714087 (+)
G197399 NA non-coding downstream 1106938 15721595 ~ 15722402 (+)
G197434 NA non-coding downstream 1239277 15853934 ~ 15856543 (+)
G197498 NA non-coding downstream 1431646 16046303 ~ 16046505 (+)
qki2 qki2,LOC108426533,LOC108274051,LOC103029551,LOC107690925,LOC107755469 other upstream 281022 14287359 ~ 14324281 (+)
tha1 LOC108274193,LOC108426437,LOC102310306,LOC107683136,LOC107722240,LOC107581676 other upstream 571160 14013573 ~ 14034143 (+)
tcf7l2 tcf7l2 other upstream 1046218 13483301 ~ 13559085 (+)
ablim1b ablim1,ablim1b,LOC107565789,LOC107689952,LOC107755543 other upstream 1583308 12958935 ~ 13021995 (+)
LOC113527673 LOC108273669,LOC108273679 other upstream 2131320 12472679 ~ 12473983 (+)
anapc16 anapc16,cj104 other downstream 2241032 16855689 ~ 16863495 (+)
mta3 LOC108273982,LOC108430512,LOC107582777,LOC107728718,LOC107698822 other downstream 2931136 17545793 ~ 17572065 (+)
pde6gb pde6g,LOC102781464,LOC103367935,LOC102221623 other downstream 3540488 18155145 ~ 18160086 (+)
G198737 ppp2r2d,LOC107706599,LOC107653113,LOC107582184,LOC107553689 other downstream 3827229 18441886 ~ 18510159 (+)
si:ch211-221j21.3 LOC108273429 other downstream 4191420 18806077 ~ 18812262 (+)

Expression


Co-expression Network