G197659 (LOC108191637,LOC106904820)


Basic Information

Item Value
gene id G197659
gene name LOC108191637,LOC106904820
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 16498435 ~ 16498661 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU234038
CTTTCCGAAAGCGTAGTAGGACACCGGCAAGGGAGTTATTGAGGTCAGGGCCTGTGAGGAGCACATCATTGAGAGAGACGGCGGAGTATCGAGCACTGGAATCAAAGACCACCCTGATCTGATTGGGTTTTTGGGGATGGTAGACCCCAAATGTAGGAAGATACCAGCATTCATCCCCTTCTCTCAGTGGTGGCACTACCTCTGCATGTCCGTTGATGAAGATCTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU234038 True 227 lncRNA 0.51 1 16498435 16498661

Neighbor

gene id symbol gene type direction distance location
zeb1b zeb1 coding upstream 743036 15695763 ~ 15755399 (+)
LOC113527272 NA coding upstream 883565 15605292 ~ 15614870 (+)
svila svil coding upstream 893939 15527593 ~ 15604496 (+)
jcada kiaa1462 coding upstream 983391 15482305 ~ 15515044 (+)
mtpap mtpap coding upstream 1029281 15457999 ~ 15469154 (+)
ppa1a LOC108273562,LOC108429359,LOC103023701,LOC107597744,LOC103362474 coding downstream 272576 16771237 ~ 16777328 (+)
sar1aa sar1b,sar1aa,LOC108429350,LOC103023380,LOC105903360,LOC107659671 coding downstream 279628 16778289 ~ 16783706 (+)
ddit4 ddit4 coding downstream 367549 16866210 ~ 16868429 (+)
narf narf,LOC107581643 coding downstream 391703 16890364 ~ 16899730 (+)
slc9a3r1a slc9a3r1 coding downstream 402732 16901393 ~ 16923228 (+)
G197501 cdh18,LOC108273706,LOC108430851,LOC107653102 non-coding upstream 448543 16049596 ~ 16049892 (+)
G197498 NA non-coding upstream 451930 16046303 ~ 16046505 (+)
G197434 NA non-coding upstream 641892 15853934 ~ 15856543 (+)
G197399 NA non-coding upstream 776033 15721595 ~ 15722402 (+)
G197397 NA non-coding upstream 784348 15705132 ~ 15714087 (+)
G197660 NA non-coding downstream 53 16498714 ~ 16498945 (+)
LOC117598690 NA non-coding downstream 259447 16758108 ~ 16763802 (+)
G197726 dnai2,LOC107654551 non-coding downstream 265347 16764008 ~ 16764327 (+)
G197816 NA non-coding downstream 408169 16906830 ~ 16907142 (+)
G197803 NA non-coding downstream 445285 16943946 ~ 16954011 (+)
qki2 qki2,LOC108426533,LOC108274051,LOC103029551,LOC107690925,LOC107755469 other upstream 2174154 14287359 ~ 14324281 (+)
tha1 LOC108274193,LOC108426437,LOC102310306,LOC107683136,LOC107722240,LOC107581676 other upstream 2464292 14013573 ~ 14034143 (+)
tcf7l2 tcf7l2 other upstream 2939350 13483301 ~ 13559085 (+)
ablim1b ablim1,ablim1b,LOC107565789,LOC107689952,LOC107755543 other upstream 3476440 12958935 ~ 13021995 (+)
LOC113527673 LOC108273669,LOC108273679 other upstream 4024452 12472679 ~ 12473983 (+)
anapc16 anapc16,cj104 other downstream 357028 16855689 ~ 16863495 (+)
mta3 LOC108273982,LOC108430512,LOC107582777,LOC107728718,LOC107698822 other downstream 1047132 17545793 ~ 17572065 (+)
pde6gb pde6g,LOC102781464,LOC103367935,LOC102221623 other downstream 1656484 18155145 ~ 18160086 (+)
G198737 ppp2r2d,LOC107706599,LOC107653113,LOC107582184,LOC107553689 other downstream 1943225 18441886 ~ 18510159 (+)
si:ch211-221j21.3 LOC108273429 other downstream 2307416 18806077 ~ 18812262 (+)

Expression


Co-expression Network