G197803


Basic Information

Item Value
gene id G197803
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 16943946 ~ 16954011 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU234194
aaaaaaaaaaaacaacaaaaaaaaacttctctgCTGATTACTCCAACATGTCATCTTCCATTATTTCCATACCAGCACTAAAGCAGCAGTTAAAAACTCGCTCAGTTAATACCTGTTTGATATCACTCCCCTGTCTGATACACAGATGCTTACACACACGTTTCAAACTGCCCTGAGGTGGAAACATAGCAGGAGGACAAACACAGTTTGAATACATTCTGTGTATGAACTTGAAGATCTGCCTACAAGTTGAAAAGAGTAGAGTGAAGAAACAAGTCATGATGATCTGCACATATCATCTCTTCAGAGACACAGCAACTGTGTGGAAAAAAGGCCTGCTTAAGTATAATGCACTATCCGTAAAAATATACAGACATGTGTGCGtcgtaaaataaataaataaataaataaactagatGCAGGAACTATTAAGACTGGTTAAGACTAGCAGGATGGAGTCATGTATAATCATAAGGAATAAGTACTCACAATATATCTATAGTAAAGGTAGCTTAATAGATATGAAAAAGAGCTAACAGGCATGAAGAGCTTCTACTATATGAAGTTCAGAGAGAGGAGAAGTACATGGAAGATTAGAAGTACACGTAGGCAAAATGGCTTAGATGGAAGAAAGTGATACAGGCAAACTGAAGCAATGTTTTAGTGGCCACACAGGCATTAAAGCCACAGTGAGATTTTGCTTGGCCTTAAACAGAACACTACCTCTAAGGAAGGAGAAATGCTGgtcttttaaataaagcatattGATCATCACATATTGATCAGTAAAACCCCCTGTATTctgatttaaacatttatatttacatgtgttcatttggcagatgcgtTTAGCCAACGTGACTTTCACGTGAGGATTCAGAACCTTGCTCAAGAAGCCCAGAAGTGGTTCTCTGGAGAGCATTAGATTTGATCTTCCGCACAGTCTTCTGATCACTAGCTCAAAACCTTGATTTTGATCACTCAGCCGCTGATGATGTAGAATATTATTGAGGCAATCAGCAAGAGGTAGAACAGCCATAAACTCAATTACACCAGTATAAGCTATGGCAAGACTGAAAATTGTCATATAAGATAGCTCTCTGTGGAAACAAAAGAAACGGTTACAGGTCAGAATTTTAGATAATCAATTTGATATAGTGATCCATCTGATCAAAGGATGTACGAGTAAGCAAAATTTTGGCTCTTATTTTGGCTGACACATATCAAGTCAGAGCATTCGTTAAAAGCAGTTCCATTCTTACAGTGTCGCTTGATAAGCACGCCTTCTTTGATATTAAGAAACTCATTAGAGTTGGTGTAAGTGCAAAACTATCTCTGTGGCAAGCTTTAGACATGAGGTATTTGGAAGGATGTACAAAGACACTGACATTCAAATCTATGTAAAAGATTCCTCAGTATTTGGTGATGCATGGCAATTCATAGGAAATAGAGTGAAGAATCTAACGAGGTGTGTAAGAAATGTACAGCAATATAAAGAAGATAAAACAGCATGTTCCTTCTGCTTTCCACACACTACCTGTAACACTGAGAAAAATCATCCAAAGTCCTATATTTCATTAGCTTATACTTAAAATCTGAGTCAAAACATAATGTGCCTTATCAAACTTCCATACTCGTCTTGCATACCGTTACATTACTAGGTAAGCAGACTGTCCATCTGTAATCATCCTGTCATTTTTGTAACCCCAATTGTACTAAACTCATCCACTTTTATATGCCACTACAGTTTTCTCCTATCCAAACCAGAGGGAGCATGCATACACATAACTCATACCATAAGAGGTAAAGAAAATTTTTTACATGGAAGCTAGTGATGGAGAATAGATGCTGTCTCAGTATTCTGTTGGCTTGAAGTGATGCTGGATGAGAGTttctgtgttagtgttagagtgaggcactgaggaaaaaaacaaaaaaaaacaattcctCTCACTCCACTGCTCATCGATGGGAACAGTGATCTTACAGCAAAAAAgacttgtgttacagcagctcaGAAAGGAGAGTTCATTCCCAGCTTCGTCTCAAACTGGAGCTTCTGCCTCTTCTGGTAACGCACACGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU234194 True 2084 lncRNA 0.38 2 16943946 16954011

Neighbor

gene id symbol gene type direction distance location
slc9a3r1a slc9a3r1 coding upstream 20718 16901393 ~ 16923228 (+)
narf narf,LOC107581643 coding upstream 44216 16890364 ~ 16899730 (+)
ddit4 ddit4 coding upstream 75517 16866210 ~ 16868429 (+)
sar1aa sar1b,sar1aa,LOC108429350,LOC103023380,LOC105903360,LOC107659671 coding upstream 160240 16778289 ~ 16783706 (+)
ppa1a LOC108273562,LOC108429359,LOC103023701,LOC107597744,LOC103362474 coding upstream 166618 16771237 ~ 16777328 (+)
asb3 LOC108274349,LOC108430683 coding downstream 68714 17022725 ~ 17028922 (+)
nrxn1a LOC108274166 coding downstream 171173 17125184 ~ 17274561 (+)
fshr LOC100304505,LOC108430642 coding downstream 362253 17316264 ~ 17326970 (+)
gch2 LOC108274278,LOC105006138,LOC103373802,LOC105918893,LOC102790074,LOC101483804,LOC105896951 coding downstream 514125 17468136 ~ 17473825 (+)
pigf pigf,LOC107698824,LOC107582779,LOC107550047,LOC107749355,LOC107728710 coding downstream 526212 17480223 ~ 17487726 (+)
G197816 NA non-coding upstream 36804 16906830 ~ 16907142 (+)
G197726 dnai2,LOC107654551 non-coding upstream 179619 16764008 ~ 16764327 (+)
LOC117598690 NA non-coding upstream 180144 16758108 ~ 16763802 (+)
G197660 NA non-coding upstream 445001 16498714 ~ 16498945 (+)
G197659 LOC108191637,LOC106904820 non-coding upstream 445285 16498435 ~ 16498661 (+)
LOC117598668 NA non-coding downstream 76739 17030750 ~ 17043247 (+)
G198007 NA non-coding downstream 373763 17327774 ~ 17327950 (+)
G198008 NA non-coding downstream 392005 17346016 ~ 17348598 (+)
G198041 NA non-coding downstream 447394 17401405 ~ 17403628 (+)
G198045 NA non-coding downstream 451692 17405703 ~ 17411141 (+)
anapc16 anapc16,cj104 other upstream 80451 16855689 ~ 16863495 (+)
qki2 qki2,LOC108426533,LOC108274051,LOC103029551,LOC107690925,LOC107755469 other upstream 2619665 14287359 ~ 14324281 (+)
tha1 LOC108274193,LOC108426437,LOC102310306,LOC107683136,LOC107722240,LOC107581676 other upstream 2909803 14013573 ~ 14034143 (+)
tcf7l2 tcf7l2 other upstream 3384861 13483301 ~ 13559085 (+)
ablim1b ablim1,ablim1b,LOC107565789,LOC107689952,LOC107755543 other upstream 3921951 12958935 ~ 13021995 (+)
mta3 LOC108273982,LOC108430512,LOC107582777,LOC107728718,LOC107698822 other downstream 591782 17545793 ~ 17572065 (+)
pde6gb pde6g,LOC102781464,LOC103367935,LOC102221623 other downstream 1201134 18155145 ~ 18160086 (+)
G198737 ppp2r2d,LOC107706599,LOC107653113,LOC107582184,LOC107553689 other downstream 1487875 18441886 ~ 18510159 (+)
si:ch211-221j21.3 LOC108273429 other downstream 1852066 18806077 ~ 18812262 (+)
LOC113527713 fam196a other downstream 2572631 19526642 ~ 19566684 (+)

Expression


Co-expression Network