G198051 (LOC108274192,LOC108430590,LOC107582782,LOC107673648,LOC107728716)


Basic Information

Item Value
gene id G198051
gene name LOC108274192,LOC108430590,LOC107582782,LOC107673648,LOC107728716
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 17431173 ~ 17436952 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU234512
TGTataaccattttatttattttttttaatattaagacAATGAAGCATAAGCCAAGAGCACCATGAGTGACAGCTACTGGTGGGAGAGGAAGACTTGGTTCCCCCTCTGCCCCCAAACAGCATACTGTAACCAAAgtcaaacaaaataatacaacaGAGCAACTTAGTAACATAGCCAGGAAGCAGGATTCATTAACTGTACataagatagacagagagagagagaaagtcaaagagataaagacagagagaagacaTGACAAAGAAAAGAGTGAGTGATTACACTGTACAGTACAATCCTCGggcagtgtaaaaaaaaaaaaaaagacaaagatggTGAGAAAGAGTGATATACCTGTGACTCCAGAGAGTTCAACATTGAAGGGTCAACGAACAAATGCTTTGaggggagtttttttttttgcagtcaaATCAATAAGGTGGTGGCAGACACTGGGCAGGAAAAAAGTGTCATCTGTATTACTTCTAATCATTGTCAAGTGCTGTTACTGTGGCACCCAGGCCACACCTCCACCTTCATTGCTCACTCCTTCTTCCCCTCAACTAAATGTGCATATACAGCATTAAAGTGACGAGTTGTATTCATGATGTTCAAGATCCACTGCCTTGCAATAAAGGACTGATATTTCTTTCAATGTAAATAACTCAAATATAAGTCAGTCAGATGACCAgtcattcatttaattcatgtgTTAAGCATTACTACACTCAACCTTCCTATACTATATGTACAGAAACATGCCAGATTGATAACATTGAACAGGGAACAATTTCTCCTATAATAAGTGTGCAAGTGTTACTCATGAAATGGCTTGCCAACGTCTCCCCTAAAGGATAAAACTGCGGTGTTATCAAGTCAAAAACGTATCTTTTATTCTGGCTACTTTTACCCACATGCTTGGGGCCATAAGACTAAACTCTTATTTTAATTTGCAAAATGCTACCTCTGTTCACACACAATTCAGAATCAAGTAAAAAACCGGCCTCTAAATATCACCGCCAACGTCCGGGTCTTTTTCATCTCATTGTAAGTCTCTTGGTGGCCTGAGAGAATGCAGACCTCTCCATGCAGCTTCTCTTGTTCTAAGCAGGAAGGCATGGAGCCAGACACCAGACGGACTGAAAATAtgaacactaaacactgtaCCATTAAACAGTGAGCAGGTGCAGGATGACCATTAAGGAAAAAAGTCTAGCCTAGCACAAAACCTGGGGGGatgcaagctttttttttttcctacaccATCCATATAGATTCTTTATCCCCTTTTAACGCACATACATACCTACAGACTCGCTAtcaaattctaaaactttcatACACATACTTTTTGACTATGTAGTGGGACACTGAGTTTCTCTTTAGTTGCAAGTTGTCAATACTTCAGATACTACGTCGACATATCTGAAATAAATAACTCCAGGGTTAACATGGTAGTTTGAAGAAGAGAAAGGCACTTTTGCATATCATACGACAGAAAGCCCATGAGTATCTTTTGGGTCTCAACATAGGGTCTTCTGTATCTTTGAAATGTTTAACCTGTAAATATTAACTGTACTTACTCAGAGAGGGAGATGCAGTAAGCGTATCACTTCTCTAGTCAATGGATTGATTTGGATCTGCTACAGTCAAAACCAAAACCTTTGGTCACTTTAATAGATACTTTATAACATACACATTTATGACACATTGTACCAGTttattcaatttcttttttttttctacacatgAACTGGACAATCCCCATTTCAAATGGAGAATCTTCCCTTCCAACACCTCACCGCTAGTAATTTTGTTACAATtgctaatattaaaaatatttaaaatctgtATCAATATACTTTTATCCTGTACATATCGCTAATAAAActagggagggagagaaaggaggTACACCACGGCGCCAACACCCCATCACACTCCACAACCCCTCACCCAACTTCACCGTCAACTACTGCCCTGataaatgtacacacatatcAAGTTACTGAGAGTGCCCTTGGAGCCAGGCCAAGCACGACACACCTTTACAGGCAGGCAGTGTGAGGGACAGCCAGCCCTCTCAAAAGACCCCATTGTTCTCAGGTGAGCCTGTGGCCTGCCCCACTGCCACCATTCCAGCTGAGGCAGTATGAGTCAGGGAATCTCGCAAACATGCCAGTCgtcaaaccaaaaaacacactgacacacggGACTTGACATCTAGTCCTCTGTGAATGAAAACCTCCCACTGTATGGGATAATATGGGAAGACGTCTTGATCACGGTTGACAGGGGGGCAGTGTTGTGCATCAGGCGCAGGTAGAGACGAATTAACACTTTATCTCAGGGCCAGGAGTCTGAACTTAGCCAGGCAATAGCAGACTAAAAGATCTACCTGATCCTTCACAGCACAGAGGGACAGAGCAAAGAAGCAAATATACACCCACAATGAATTTACGAGGAGGTCAATCCACTCCCCATCATTTTCTCTGCTGATGCGTCATGCTGCAAGCACAAACATCGATATGCTGGATCTGTATTTCAACCATTAGGAGGAGGAATCGTTGTTCATACTGCATGTGTATTAGTCATGTACAGTTGCATAATTGACAGCTATGGATCTATGTAGGCAGACTGCCTGAGCAATCATCAAATTTTTCAGGCtgtggggaaagaaaaaaaaggggtgaTAAGCAACCTATATTCCATATATACAAAAGTTTAAGtcaattaaattaaagcatCAGCATAGGCCTGACTGACTTGCACTTGCATTTAGGAGCTGAACTGGACCTCTGAGACTATGAGAACTGTCATATAGTATAAATCTGAAACTGTAATGTTATTCCATGCAATGGGACTGACGATCAAGATGTAGATCTCTAGTGCAATGTGGATCAGACAAGGTGAGCTTATagagtctgtgtgtatttgtgtctatcaatatataaatgtgtttatgctTAAAAATGGTCCCAGTGTTGCAGGATTATATATTGCCTCTGCTGCTCCCACTAATATAAGCACAGTTGAGTTTAAGTGCCCTTTAACACACCCCTTCTCCCACGGCACTGACAGTCCatttcctaataaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaaaacagaattacAATTATCACCACTTCCTGTGCAATTAGTGGTAGGAATTAATGATTACAAAACATATTGATAGCAATGGAACTTTCACACAGAGTGACTATGTCTTTAGAAAACCAGGCACACTTCACATCACATAACACAATTGACACTGTAGCCACATTATGCATCATCGTCAACATCACTTCGTGGAAGTGAAAAGAAGCAGAACGTCACAGAGACCTTCTGTCGAaccttctataacagcagtctGGACACATTGTACTAAACCAAGTCCATCTTTCCCAGACTTCTTGCTCTTGTTGTCTGTGAATTCTATAGATCCAAAGTCTGTTTCCTGCCCTTCAATGCCTGCTCAACTCTTCCGGACAGTGTGAGCACAGAATGTAACCTTGGGACCACTAACAGAGCACCATGAATGCAAAGATTTATAGGTAAACATAACTTGATCACAGCTCCGCCCAGGGCACACCATCTTGCCAAAACTGTCCATGATACAAACTTAAAGGttgtctttttattatttccaaTGCTTTTTTAAGTATGGAGGTGAAGGGCTGCAGAATTTTATGTTAGTatatgaaaaagaataaaagtagtgaaaaaagtaaaagcatGTAGCTAAGCAGTGAGAGAATGGAGGTGTATGAGTGCATTCTTCAGAAGTAGACGCCTCTTCTTcaaagcaatgcaaaaaaagagGCTTGGAGATGTGGGGTGGGAAGGTAAAAGGCCCCCCACTGTTTCAGTCCAGACTGATGTGTCTACTGGAGGCTGCTTTAGCTGTATACATATTTGTTTTgagtaataataaacaaaaaacaaaaaacccagaAGCTTATATATTGGGTTTCAGGTTCAGGCCCCTTTGCACTCATCCCGCACTGACTACCCTTCACCTTAAAAGCCTTTTCCTACAAAAAGAACTTTTCCTCCAAATATTTTCCTGCAAAGTGCTGAATAGACTACTCTTCAGGGAGAGCGCCCCCATCCCCTGTTGCTCGGTACACAGTGTAACCCCCTCCCACACTCTTAGTCTATTATGAGTAGTGCTGCGTTTCACTTGGCCTTGAGCAGCTCTCGCTCCAGCCAGCGCACACGCACCCTCTGCTTATAATGATACTCCCTGAGGTAGTCTTGCAGCGCTGGGGGTAAAGGTAGCGCTGCAATGCCGTCGTAGGTGGTCCCACGGCAGATGACTGCCCTAGCCAGGCTCTGTAGACCAAACGGAAAAGTCCGGTGAAGGGGCAAGGTTAGCAGAGGCTCGAAGAACATGCAGGCGCTGGGGTCTTTGTAGTGCTCCAGCAGTGCCGTGACTGTGGCTGCATGGAACACACAAGGGTCGTGGGCATCAAAGCTGAAGTTGTGGTTCCATTGTTCAATACGTGCATGCAACGAGCGACCATAACGGCGAAAACTAACAGAAAACAGGTAGTCCTCCTGGGCAGAGTCGCGCAGCAGAAAGGTGCCCTCAGGCCGGCCATCGAGCAGTGCCTCGGCCTCATAGCGGTCCATTACACCCCAGTAGCAGGGTAGAGCTGTGATCTGCATCAGGTCTGGCACTAGGCAGTGGATATAGTCaatctgtgtgtgcactttccAGGGCCCTGGCTGCTTGCCGCCCAGGAGGCCCTCTGCTGAATTATGGCGCTGCTTGGGACGGCGAGCCTGCAAACAAAGAGTGGTGGTGTCATCATCTTCAGAGTCACAGTCAGCTGCTGTGGCTCCCCGACTCTCACCCAAGGCCTCCCCCATCCCAGGAGCTAGTTTGGGTCCCAGCTTGTAGACTGTAGCCAGTGGAGCTGTAATAGCCTCAACAGTGTGTATCTGAGCATCAGGTGGTGGATCCACTCCCTCTTCTATACTGAGCCTTCGTCGCTCACGTAGACGTTCCTCCTCGTCCTCTGGAGATGCACGAGCACCATTAGGAGAGTCTGTGGAGCAGTCCACTGCTGCAGCTGTAACAGGGGCTGTATGCTGTTTGATGAGGTGCCATTTACGAGCAAGATCAGAGCCAGGAGGGAAGGGGCATGTTTCCAGCATTAGCTCGGTGATCTGGATCTTGCGCTTGGGCAGCCGTGAGTGGGTGCCACGTGATGACAGACGCAGAGGGAGGCACAGGCCCATTGTTTCATGGAGCTGCTGGCGCAGTGAACGTGGTACTCCCTGGTCTGGTTCATCCCTGCTGCTATTTGCTAGGTGTCTCCGACGGGAGCGGCCACTCCGTCGGTCTGTGGTCTCCAGGGAACTCTGTGCCTTGGTGGAGCATGAGTGCCTCTTCTTGCCACTCCAAGGTGCGTGACGTGAATAGGAATCTCTGCGGGCACCAAGGGGAGCGCACCCATCTTCACTGTCCTGCTCAACTGTGATCTCCAGTATTTGAGGCACATCTGCCACGCAGTTATGACCCCGATGTACCACGCTTCCATTAGCCCTCCGTGACACAACAGGGTGTGTCGACAGGCTGTCAGAAGGACTGGCGAGTTCCAGTGTGCTCTCTCCTTCGGTCTGGTCCACACTCTGACAAAATGTATGTGGCTGTGGTTGCATTTCCCCTCGGGAACTTCCATCTTGGTGGAGCAGAGACTGACATCCCCTCTTCAGGTTGCTCCACACCTTGCCTACCTTCTCCATGAGGTGGGGGCACCTGAATCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU234512 True 5780 lncRNA 0.45 1 17431173 17436952

Neighbor

gene id symbol gene type direction distance location
fshr LOC100304505,LOC108430642 coding upstream 104203 17316264 ~ 17326970 (+)
nrxn1a LOC108274166 coding upstream 156612 17125184 ~ 17274561 (+)
asb3 LOC108274349,LOC108430683 coding upstream 402251 17022725 ~ 17028922 (+)
slc9a3r1a slc9a3r1 coding upstream 507945 16901393 ~ 16923228 (+)
narf narf,LOC107581643 coding upstream 531443 16890364 ~ 16899730 (+)
gch2 LOC108274278,LOC105006138,LOC103373802,LOC105918893,LOC102790074,LOC101483804,LOC105896951 coding downstream 31184 17468136 ~ 17473825 (+)
pigf pigf,LOC107698824,LOC107582779,LOC107550047,LOC107749355,LOC107728710 coding downstream 43271 17480223 ~ 17487726 (+)
trnai-uau_6 NA coding downstream 140331 17577283 ~ 17577376 (+)
ppm1bb ppm1bb,LOC108273990,LOC108430462,LOC107582773,LOC107749348,LOC107698817,LOC107550052 coding downstream 206068 17643020 ~ 17669237 (+)
six3b six3b,LOC108273567,LOC107749382,LOC107550037,LOC107698799,LOC107582771,LOC107739239 coding downstream 271964 17708916 ~ 17711812 (+)
G198044 LOC107670363,LOC107396020,LOC105896953,LOC102293206 non-coding upstream 15304 17411454 ~ 17415869 (+)
G198045 NA non-coding upstream 20032 17405703 ~ 17411141 (+)
G198041 NA non-coding upstream 27545 17401405 ~ 17403628 (+)
G198008 NA non-coding upstream 82575 17346016 ~ 17348598 (+)
G198007 NA non-coding upstream 103223 17327774 ~ 17327950 (+)
G198052 NA non-coding downstream 3196 17440148 ~ 17440362 (+)
G198050 NA non-coding downstream 13405 17450357 ~ 17450650 (+)
G198075 kcng3,LOC108273984,LOC108430560,LOC107749354,LOC107579671,LOC107728707,LOC107579296 non-coding downstream 101597 17538549 ~ 17540320 (+)
G198078 NA non-coding downstream 104904 17541856 ~ 17542072 (+)
G198083 NA non-coding downstream 127647 17564599 ~ 17565031 (+)
anapc16 anapc16,cj104 other upstream 567678 16855689 ~ 16863495 (+)
qki2 qki2,LOC108426533,LOC108274051,LOC103029551,LOC107690925,LOC107755469 other upstream 3106892 14287359 ~ 14324281 (+)
tha1 LOC108274193,LOC108426437,LOC102310306,LOC107683136,LOC107722240,LOC107581676 other upstream 3397030 14013573 ~ 14034143 (+)
tcf7l2 tcf7l2 other upstream 3872088 13483301 ~ 13559085 (+)
ablim1b ablim1,ablim1b,LOC107565789,LOC107689952,LOC107755543 other upstream 4409178 12958935 ~ 13021995 (+)
mta3 LOC108273982,LOC108430512,LOC107582777,LOC107728718,LOC107698822 other downstream 108841 17545793 ~ 17572065 (+)
pde6gb pde6g,LOC102781464,LOC103367935,LOC102221623 other downstream 718193 18155145 ~ 18160086 (+)
G198737 ppp2r2d,LOC107706599,LOC107653113,LOC107582184,LOC107553689 other downstream 1004934 18441886 ~ 18510159 (+)
si:ch211-221j21.3 LOC108273429 other downstream 1369125 18806077 ~ 18812262 (+)
LOC113527713 fam196a other downstream 2089690 19526642 ~ 19566684 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G234069 NA non-coding NC_048567.1 CM023221.2 20914147 ~ 20915906 (-)
rainbow trout (Oncorhynchus mykiss) G1835016 NA non-coding NC_048587.1 CM023241.2 15751075 ~ 15752563 (-)
eurasian perch (Perca fluviatilis) G197053 NA unknown NC_053130.1 CM020927.1 26663159 ~ 26663785 (+)