G198075 (kcng3,LOC108273984,LOC108430560,LOC107749354,LOC107579671,LOC107728707,LOC107579296)


Basic Information

Item Value
gene id G198075
gene name kcng3,LOC108273984,LOC108430560,LOC107749354,LOC107579671,LOC107728707,LOC107579296
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 17538549 ~ 17540320 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU234553
AATTGCTTTCAGTATATCCCTAACCACAGAATAGACAGGAGCCAGTGATAGAGAGAGGCTAGCTTTTGTGCTTGCTATGTGTAcggtgaaggaggaggagagtgaCAGCTCTCCGACTGCTGAGTGTGTGGGTGAGGTGTTTGCTAATCAATTTGGTTAACACCTCTCGGTCCGCACAGTCATCTTCTTCGATTGAGATATGGGCAGGTGGTGGCTTTATCCTTGTGTAGCTCAACATCTGATGTTTGTTTCTTGAAGTTAAGGATCTGATCTTCATAATGGGGCTGCAACGCTGACTGGAATTTCGTTTCAATTATAACATTATCCACTAGGACTACACCTTGCTGCATGTTTTTTCTCATATTTCCACAACATCCCGTCAGTCgctataaatatttgttttcctttatggactctctctgttcttccttTCTTCATATCTCAAGTGCTTTCAAATCCAAACTGATCTGACTTGATCTAACGGGCTGGAGAAACTTCTCCATGGGAACAAAGTGTTTCTGTTTGTAAAGCCAGACCAGGGCTTTTGAGGAAAAGCCGACAAAGGTCTGGAGAAGTGTCAAGACCCGAAAAGGCTTGCCAGATGCCCCTCATAGGCGGCCATGCCATCTGGTGCCGGCTGTTCCCACAGTTGTCCTTTTTAAATATCACCAAACACAAGACATTCTGTCTCTTTGGGTCAGTTTCATTAGTTTTCACAGAGATGGGGTTATAATGCAAACACTGGCTTATGTAGCTCCTTTGGGTTGTTATGATTACAGTGTGCTATCCAGATTGGGGCTCTTTGTATTTTTCTCCTGTCACTTACATAAATATGAATCACAGTTGTCTGAGGTACCTGTTATCATTGAAACTTATCAAAAATGTAGAGATGCTGCATTTTAGTAGTCATTTTCTCTGTAGACATGATCATATTTCTATAGTTTAGCTTACAATTCATGAGgcttttaaaggttttaaaacaAAGGCACAGAAAGATCAGATGAGGGGTAACAGAGCTGGGCTGTGGACCAGTATGTCCCAGAGAAACCAATGTCAGTTGAGAAACTCAGCAGAGAGACTTCGCACGCAGCGTGCTGAGCGGAATTTGAGCTCGTGGTAGCACTGCACAAAGCTGTGGTAGATAAAGGTAATTGGGAGAGCCAGGAGCACAATGCCACTcacgacacacacaccacccagcACGCGGCCCGGCATTGTGATGGGATACATGTCTCCATAGCCTACGGTGGTCATGGAGATAATAACCCACCAGCAGGCTGCCGGGATGCTGGCGTAGTCCTCATTGCTGCTTTCCAGGTCCAGCCCGTGCTCCAGAAGCTGAGCCAGAGCGCTGAAGATGGCCATGGCAACACACACGAACACCAGCAGCATGACCATCTCGCGGTAGCAGCGGCGCAGTGTCAGCCCCAGCGTCTGCAGACCAAGGAAGTGGCGTGCCAGCTTAATTAGCCAGAAGATGCGCATCATCCTCAGCACACGCAGTGTGACACCTGCTCTTTGAAGCTGCGGGTTTTCCCCAGTCAGGGCTGTCATGGCCACTGATACATAGTAAGGTGTTATAGCCAGGAGGTCGATGATGTTCAGAGGCCGCCGTACAAACTCACATTTGTCCCGTGAGACAATGAAACGCACTATGCACTCGGCAGTGAACCAGCCAATGCAAACCGCTTCAATGATCctggcagagagagaggacagagagaaagtgaacaGACAGCAGCGGTTGCAATTCATGCTAATAACACTACTGT

Function

symbol description
kcng3 Predicted to enable delayed rectifier potassium channel activity. Predicted to be involved in potassium ion transmembrane transport. Predicted to act upstream of or within several processes, including potassium ion transport; protein homooligomerization; and regulation of ion transmembrane transport. Predicted to be located in membrane. Predicted to be part of voltage-gated potassium channel complex. Predicted to be integral component of membrane. Orthologous to human KCNG3 (potassium voltage-gated channel modifier subfamily G member 3).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU234553 True 1772 lncRNA 0.47 1 17538549 17540320

Neighbor

gene id symbol gene type direction distance location
pigf pigf,LOC107698824,LOC107582779,LOC107550047,LOC107749355,LOC107728710 coding upstream 50823 17480223 ~ 17487726 (+)
gch2 LOC108274278,LOC105006138,LOC103373802,LOC105918893,LOC102790074,LOC101483804,LOC105896951 coding upstream 64724 17468136 ~ 17473825 (+)
fshr LOC100304505,LOC108430642 coding upstream 211579 17316264 ~ 17326970 (+)
nrxn1a LOC108274166 coding upstream 263988 17125184 ~ 17274561 (+)
asb3 LOC108274349,LOC108430683 coding upstream 509627 17022725 ~ 17028922 (+)
trnai-uau_6 NA coding downstream 36963 17577283 ~ 17577376 (+)
ppm1bb ppm1bb,LOC108273990,LOC108430462,LOC107582773,LOC107749348,LOC107698817,LOC107550052 coding downstream 102700 17643020 ~ 17669237 (+)
six3b six3b,LOC108273567,LOC107749382,LOC107550037,LOC107698799,LOC107582771,LOC107739239 coding downstream 168596 17708916 ~ 17711812 (+)
prkcea prkcea,LOC108274197,LOC108430457,LOC107550054,LOC107698816,LOC107739250 coding downstream 192440 17732760 ~ 17792629 (+)
epas1a LOC108273968 coding downstream 255708 17796028 ~ 17822290 (+)
G198050 NA non-coding upstream 87899 17450357 ~ 17450650 (+)
G198052 NA non-coding upstream 98187 17440148 ~ 17440362 (+)
G198051 LOC108274192,LOC108430590,LOC107582782,LOC107673648,LOC107728716 non-coding upstream 101597 17431173 ~ 17436952 (+)
G198044 LOC107670363,LOC107396020,LOC105896953,LOC102293206 non-coding upstream 122680 17411454 ~ 17415869 (+)
G198045 NA non-coding upstream 127408 17405703 ~ 17411141 (+)
G198078 NA non-coding downstream 1536 17541856 ~ 17542072 (+)
G198083 NA non-coding downstream 24279 17564599 ~ 17565031 (+)
G198084 NA non-coding downstream 28058 17568378 ~ 17569162 (+)
G198081 LOC108273981 non-coding downstream 31985 17572305 ~ 17574233 (+)
G198091 NA non-coding downstream 35620 17575940 ~ 17576586 (+)
anapc16 anapc16,cj104 other upstream 675054 16855689 ~ 16863495 (+)
qki2 qki2,LOC108426533,LOC108274051,LOC103029551,LOC107690925,LOC107755469 other upstream 3214268 14287359 ~ 14324281 (+)
tha1 LOC108274193,LOC108426437,LOC102310306,LOC107683136,LOC107722240,LOC107581676 other upstream 3504406 14013573 ~ 14034143 (+)
tcf7l2 tcf7l2 other upstream 3979464 13483301 ~ 13559085 (+)
ablim1b ablim1,ablim1b,LOC107565789,LOC107689952,LOC107755543 other upstream 4516554 12958935 ~ 13021995 (+)
mta3 LOC108273982,LOC108430512,LOC107582777,LOC107728718,LOC107698822 other downstream 5473 17545793 ~ 17572065 (+)
pde6gb pde6g,LOC102781464,LOC103367935,LOC102221623 other downstream 614825 18155145 ~ 18160086 (+)
G198737 ppp2r2d,LOC107706599,LOC107653113,LOC107582184,LOC107553689 other downstream 901566 18441886 ~ 18510159 (+)
si:ch211-221j21.3 LOC108273429 other downstream 1265757 18806077 ~ 18812262 (+)
LOC113527713 fam196a other downstream 1986322 19526642 ~ 19566684 (+)

Expression


Co-expression Network