G198078


Basic Information

Item Value
gene id G198078
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 17541856 ~ 17542072 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU234556
cTCTCAAAGTAAACACATTCTAGCCTggtgcaaacaaaaatgatGAAGAATCTTGTGTACACAAGGATTTATGTTGGATTCAGTCTTTCATTAATCATCCTGTCAGCTTGTTCTTTTCCCAGATCAATTAGTGATATAGAGAGAGATCTGTTGATAATCATGCTGAAATAAGGAAGATATAGAATGGAACCACAACAATGGGAAAAGCTAGGGTTAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU234556 True 217 lncRNA 0.36 1 17541856 17542072

Neighbor

gene id symbol gene type direction distance location
pigf pigf,LOC107698824,LOC107582779,LOC107550047,LOC107749355,LOC107728710 coding upstream 54130 17480223 ~ 17487726 (+)
gch2 LOC108274278,LOC105006138,LOC103373802,LOC105918893,LOC102790074,LOC101483804,LOC105896951 coding upstream 68031 17468136 ~ 17473825 (+)
fshr LOC100304505,LOC108430642 coding upstream 214886 17316264 ~ 17326970 (+)
nrxn1a LOC108274166 coding upstream 267295 17125184 ~ 17274561 (+)
asb3 LOC108274349,LOC108430683 coding upstream 512934 17022725 ~ 17028922 (+)
trnai-uau_6 NA coding downstream 35211 17577283 ~ 17577376 (+)
ppm1bb ppm1bb,LOC108273990,LOC108430462,LOC107582773,LOC107749348,LOC107698817,LOC107550052 coding downstream 100948 17643020 ~ 17669237 (+)
six3b six3b,LOC108273567,LOC107749382,LOC107550037,LOC107698799,LOC107582771,LOC107739239 coding downstream 166844 17708916 ~ 17711812 (+)
prkcea prkcea,LOC108274197,LOC108430457,LOC107550054,LOC107698816,LOC107739250 coding downstream 190688 17732760 ~ 17792629 (+)
epas1a LOC108273968 coding downstream 253956 17796028 ~ 17822290 (+)
G198075 kcng3,LOC108273984,LOC108430560,LOC107749354,LOC107579671,LOC107728707,LOC107579296 non-coding upstream 1536 17538549 ~ 17540320 (+)
G198050 NA non-coding upstream 91206 17450357 ~ 17450650 (+)
G198052 NA non-coding upstream 101494 17440148 ~ 17440362 (+)
G198051 LOC108274192,LOC108430590,LOC107582782,LOC107673648,LOC107728716 non-coding upstream 104904 17431173 ~ 17436952 (+)
G198044 LOC107670363,LOC107396020,LOC105896953,LOC102293206 non-coding upstream 125987 17411454 ~ 17415869 (+)
G198083 NA non-coding downstream 22527 17564599 ~ 17565031 (+)
G198084 NA non-coding downstream 26306 17568378 ~ 17569162 (+)
G198081 LOC108273981 non-coding downstream 30233 17572305 ~ 17574233 (+)
G198091 NA non-coding downstream 33868 17575940 ~ 17576586 (+)
G198088 NA non-coding downstream 128108 17670180 ~ 17670945 (+)
anapc16 anapc16,cj104 other upstream 678361 16855689 ~ 16863495 (+)
qki2 qki2,LOC108426533,LOC108274051,LOC103029551,LOC107690925,LOC107755469 other upstream 3217575 14287359 ~ 14324281 (+)
tha1 LOC108274193,LOC108426437,LOC102310306,LOC107683136,LOC107722240,LOC107581676 other upstream 3507713 14013573 ~ 14034143 (+)
tcf7l2 tcf7l2 other upstream 3982771 13483301 ~ 13559085 (+)
ablim1b ablim1,ablim1b,LOC107565789,LOC107689952,LOC107755543 other upstream 4519861 12958935 ~ 13021995 (+)
mta3 LOC108273982,LOC108430512,LOC107582777,LOC107728718,LOC107698822 other downstream 3721 17545793 ~ 17572065 (+)
pde6gb pde6g,LOC102781464,LOC103367935,LOC102221623 other downstream 613073 18155145 ~ 18160086 (+)
G198737 ppp2r2d,LOC107706599,LOC107653113,LOC107582184,LOC107553689 other downstream 899814 18441886 ~ 18510159 (+)
si:ch211-221j21.3 LOC108273429 other downstream 1264005 18806077 ~ 18812262 (+)
LOC113527713 fam196a other downstream 1984570 19526642 ~ 19566684 (+)

Expression


Co-expression Network