G198083


Basic Information

Item Value
gene id G198083
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 17564599 ~ 17565031 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU234561
TAGCTCCTGTCATTCTGCTCTGTCCATGCCCTCATCAAgcgtgttttgtgtttctttttatgGCGTGTGAATGCGAATGTACACACACCCATTTTCCTTCACATTTGATTTCCTCTAGCCAAGCACATATGTTGGCTATTTGGATTCTTTTGCATACCAATCAGCATGCTGCCTGTGAAAATACAACAGTCCTGCTAAGATATCAGTTTTTCCAGGGTTCTTTTTGTTTAAGGGTTAAGTGGTGCTTTAGCTCTAAAGTGAATGCATGTAAGCTTTTAACATCAATACCCACTTGAGTATCACATAATATCCACTAAATGTAGCATACAAGAATCACTTAAATCTAAAAGGACAGAAGAACCACAGACAGTTTGGCTATTGAGAAATAAAGCTTTTAAAGCCTGATGAGAAATGACCAGCTTCAAAGATAATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU234561 True 433 lncRNA 0.38 1 17564599 17565031

Neighbor

gene id symbol gene type direction distance location
pigf pigf,LOC107698824,LOC107582779,LOC107550047,LOC107749355,LOC107728710 coding upstream 76873 17480223 ~ 17487726 (+)
gch2 LOC108274278,LOC105006138,LOC103373802,LOC105918893,LOC102790074,LOC101483804,LOC105896951 coding upstream 90774 17468136 ~ 17473825 (+)
fshr LOC100304505,LOC108430642 coding upstream 237629 17316264 ~ 17326970 (+)
nrxn1a LOC108274166 coding upstream 290038 17125184 ~ 17274561 (+)
asb3 LOC108274349,LOC108430683 coding upstream 535677 17022725 ~ 17028922 (+)
trnai-uau_6 NA coding downstream 12252 17577283 ~ 17577376 (+)
ppm1bb ppm1bb,LOC108273990,LOC108430462,LOC107582773,LOC107749348,LOC107698817,LOC107550052 coding downstream 77989 17643020 ~ 17669237 (+)
six3b six3b,LOC108273567,LOC107749382,LOC107550037,LOC107698799,LOC107582771,LOC107739239 coding downstream 143885 17708916 ~ 17711812 (+)
prkcea prkcea,LOC108274197,LOC108430457,LOC107550054,LOC107698816,LOC107739250 coding downstream 167729 17732760 ~ 17792629 (+)
epas1a LOC108273968 coding downstream 230997 17796028 ~ 17822290 (+)
G198078 NA non-coding upstream 22527 17541856 ~ 17542072 (+)
G198075 kcng3,LOC108273984,LOC108430560,LOC107749354,LOC107579671,LOC107728707,LOC107579296 non-coding upstream 24279 17538549 ~ 17540320 (+)
G198050 NA non-coding upstream 113949 17450357 ~ 17450650 (+)
G198052 NA non-coding upstream 124237 17440148 ~ 17440362 (+)
G198051 LOC108274192,LOC108430590,LOC107582782,LOC107673648,LOC107728716 non-coding upstream 127647 17431173 ~ 17436952 (+)
G198084 NA non-coding downstream 3347 17568378 ~ 17569162 (+)
G198081 LOC108273981 non-coding downstream 7274 17572305 ~ 17574233 (+)
G198091 NA non-coding downstream 10909 17575940 ~ 17576586 (+)
G198088 NA non-coding downstream 105149 17670180 ~ 17670945 (+)
G198158 NA non-coding downstream 298508 17863539 ~ 17912523 (+)
anapc16 anapc16,cj104 other upstream 701104 16855689 ~ 16863495 (+)
qki2 qki2,LOC108426533,LOC108274051,LOC103029551,LOC107690925,LOC107755469 other upstream 3240318 14287359 ~ 14324281 (+)
tha1 LOC108274193,LOC108426437,LOC102310306,LOC107683136,LOC107722240,LOC107581676 other upstream 3530456 14013573 ~ 14034143 (+)
tcf7l2 tcf7l2 other upstream 4005514 13483301 ~ 13559085 (+)
ablim1b ablim1,ablim1b,LOC107565789,LOC107689952,LOC107755543 other upstream 4542604 12958935 ~ 13021995 (+)
pde6gb pde6g,LOC102781464,LOC103367935,LOC102221623 other downstream 590114 18155145 ~ 18160086 (+)
G198737 ppp2r2d,LOC107706599,LOC107653113,LOC107582184,LOC107553689 other downstream 876855 18441886 ~ 18510159 (+)
si:ch211-221j21.3 LOC108273429 other downstream 1241046 18806077 ~ 18812262 (+)
LOC113527713 fam196a other downstream 1961611 19526642 ~ 19566684 (+)
si:ch211-216b21.2 LOC108273439,LOC107082319,LOC108429207,LOC107704231,LOC105932487,LOC108246656,LOC108274355,LOC102229454,LOC106946734 other downstream 3892360 21457391 ~ 21500929 (+)

Expression


Co-expression Network