G198088


Basic Information

Item Value
gene id G198088
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 17670180 ~ 17670945 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU234567
TAAACTATTGAACACTATATAATGCTTTGTAAAGTAGGAGGGTAAATGAAGAGGGGTGAAAATGCTTGCTGATGAAATTACCACATAGCAATGCATGACTCCATTTCTCATGCATTTCTGTTCAATTCGTACAGGACCATTGTAAATTACATGACCGTGAGTTatctggtttttattttttaagatttgtCTTGAATATGACTCAGTGCTTTAACTGAGAATCCCAGCTCTTGTAATAGTTTATGTATACTGTCTATAAGCTCTCACTTGAACAAGCCCTTATTAGAAAAGCAAACATTTCACCAATGGGCTGCAGATGTTCAGTGAAACAAACTGTTTACTTAAAACAAATAAGAGATAATCTTAGTCTGTGGGtaaaagtgatttatttctttgttttaaaaaaacctttacGTTATATAAAACTTCAGCGAGTGCTTCATGAATGAGGTgtaattttgtgattttgctatTTTAAATAGGTTTTACAGTTTTCAAAATATGTCCTTTTGTGAGTGTGGAAGTGGCAGTGCTGGTTTGATTAGCAGGTATACTGAGCAGGGGGTAGGGATTTACTCCTCTTTCCAAAACCTTGGTTACACTGCAGAATTAAATGAGCTGCTGAAAGAATGCACACGGGTGGCACGGCTGTGCGTCCTGGGGGCTGAAGCTTAAAGCACAGCCCGAGTGGCAGGATTACGGAGGAAATGAGAGGACAGAGCAGGGGACCTAAAGTCAGGTAATTCATCTCTAATTAAACACACCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU234567 True 766 lncRNA 0.38 1 17670180 17670945

Neighbor

gene id symbol gene type direction distance location
ppm1bb ppm1bb,LOC108273990,LOC108430462,LOC107582773,LOC107749348,LOC107698817,LOC107550052 coding upstream 943 17643020 ~ 17669237 (+)
trnai-uau_6 NA coding upstream 92804 17577283 ~ 17577376 (+)
pigf pigf,LOC107698824,LOC107582779,LOC107550047,LOC107749355,LOC107728710 coding upstream 182454 17480223 ~ 17487726 (+)
gch2 LOC108274278,LOC105006138,LOC103373802,LOC105918893,LOC102790074,LOC101483804,LOC105896951 coding upstream 196355 17468136 ~ 17473825 (+)
fshr LOC100304505,LOC108430642 coding upstream 343210 17316264 ~ 17326970 (+)
six3b six3b,LOC108273567,LOC107749382,LOC107550037,LOC107698799,LOC107582771,LOC107739239 coding downstream 37971 17708916 ~ 17711812 (+)
prkcea prkcea,LOC108274197,LOC108430457,LOC107550054,LOC107698816,LOC107739250 coding downstream 61815 17732760 ~ 17792629 (+)
epas1a LOC108273968 coding downstream 125083 17796028 ~ 17822290 (+)
glud1b glud1b,LOC108273953,LOC107700126,LOC107739271,LOC107698813,LOC108430434,LOC107749346,LOC107550058 coding downstream 161860 17832805 ~ 17850858 (+)
mmrn2b LOC108273952 coding downstream 197917 17868862 ~ 17878282 (+)
G198091 NA non-coding upstream 93594 17575940 ~ 17576586 (+)
G198081 LOC108273981 non-coding upstream 95947 17572305 ~ 17574233 (+)
G198084 NA non-coding upstream 101018 17568378 ~ 17569162 (+)
G198083 NA non-coding upstream 105149 17564599 ~ 17565031 (+)
G198078 NA non-coding upstream 128108 17541856 ~ 17542072 (+)
G198158 NA non-coding downstream 192594 17863539 ~ 17912523 (+)
G198170 ldb3,ldb3b,LOC108274368,LOC107749342,LOC107552745 non-coding downstream 244481 17915426 ~ 17918595 (+)
G198174 NA non-coding downstream 263085 17934030 ~ 17934370 (+)
G198177 NA non-coding downstream 266587 17937532 ~ 17937771 (+)
G198213 NA non-coding downstream 314218 17985163 ~ 17985468 (+)
mta3 LOC108273982,LOC108430512,LOC107582777,LOC107728718,LOC107698822 other upstream 98115 17545793 ~ 17572065 (+)
anapc16 anapc16,cj104 other upstream 806685 16855689 ~ 16863495 (+)
qki2 qki2,LOC108426533,LOC108274051,LOC103029551,LOC107690925,LOC107755469 other upstream 3345899 14287359 ~ 14324281 (+)
tha1 LOC108274193,LOC108426437,LOC102310306,LOC107683136,LOC107722240,LOC107581676 other upstream 3636037 14013573 ~ 14034143 (+)
tcf7l2 tcf7l2 other upstream 4111095 13483301 ~ 13559085 (+)
pde6gb pde6g,LOC102781464,LOC103367935,LOC102221623 other downstream 484200 18155145 ~ 18160086 (+)
G198737 ppp2r2d,LOC107706599,LOC107653113,LOC107582184,LOC107553689 other downstream 770941 18441886 ~ 18510159 (+)
si:ch211-221j21.3 LOC108273429 other downstream 1135132 18806077 ~ 18812262 (+)
LOC113527713 fam196a other downstream 1855697 19526642 ~ 19566684 (+)
si:ch211-216b21.2 LOC108273439,LOC107082319,LOC108429207,LOC107704231,LOC105932487,LOC108246656,LOC108274355,LOC102229454,LOC106946734 other downstream 3786446 21457391 ~ 21500929 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G265733 NA non-coding CI01000063 null 5414430 ~ 5414668 (-)