G198158


Basic Information

Item Value
gene id G198158
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 17863539 ~ 17912523 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU234642
GGATGACTGCAGCAGTGCTCAGCTGATCTTTAGTTATCCACAGACAGGTACAGTGCTAGATGCTGCacagagtaataataataattaaaaaaaaataaaaaatcgtATCACAGTCTCATAACTTTGGATCACTATAAATGGATTTGACACACCTGAACACGCATTCTGCAAAGTCCCAATTAACAAAGTGTTATCATGCAATCTTCACAGTTAGACAAGATCTAATATTATGGGAATATTTAGGTTCAATACTGTCCTACAATTCAAAATGCTGCAGATTTTTGTACCCTCTTTTTTGCATCACTTGGATGAAAATATTTAGCACATTTCTGCATCACAAGAAATaaaaaaagcccACTGAAggaaaactattattattaggagTAGTGAAGCCAGGCTACGGGCCAATCCGCATACTCACCTACTACATAGTGTGGAAATAAACTAGTACGCTGCCTGTCTAGCCCTAAGCAGCACACTAGTCTATGTAGGACGCAAGTAGTCTACTAAATGTAGAGCGCATCGGCTTTAAATGCCTTTAAACTGCACatgtaattaaaacaaacagacGCCATTTAAAGTGATAACACACGGTTTAACCATGAGCATATTACacctgtttaatatttatttatttattgatttatttattttataaccaAATACATccctctgaaaagaaaaaaaaccctgaacaaACACCCGGAATCTCCACTTACCTATTTAATAAATTCACACCAGCATTTAAAACATCCTTACAAAACAGCTACTGACTGGATGATGATGGTTTCAAAGCAAAAGGTCGTAGAAAGGTCCAGAATTAGGAATTAAAAGCGGATTTATCCAGTTAGTGTGGGTGTGAAAGCGAGGCTCGGAGGCTCCAGCGTTGTTTTTATGTTCGTAGTAACCGGAGTCAGACACATTCCGCTCGCGCAGCTCGGGGCTGAGCAATCCTCCAATCAGTGCACAGCAGAGGGAGTGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU234642 True 983 lncRNA 0.39 2 17863539 17912523

Neighbor

gene id symbol gene type direction distance location
glud1b glud1b,LOC108273953,LOC107700126,LOC107739271,LOC107698813,LOC108430434,LOC107749346,LOC107550058 coding upstream 12681 17832805 ~ 17850858 (+)
epas1a LOC108273968 coding upstream 41249 17796028 ~ 17822290 (+)
prkcea prkcea,LOC108274197,LOC108430457,LOC107550054,LOC107698816,LOC107739250 coding upstream 70910 17732760 ~ 17792629 (+)
six3b six3b,LOC108273567,LOC107749382,LOC107550037,LOC107698799,LOC107582771,LOC107739239 coding upstream 151727 17708916 ~ 17711812 (+)
ppm1bb ppm1bb,LOC108273990,LOC108430462,LOC107582773,LOC107749348,LOC107698817,LOC107550052 coding upstream 194302 17643020 ~ 17669237 (+)
gpr142 LOC108274175,LOC103030394,LOC108429827,LOC107690947,LOC107755455 coding downstream 197116 18109639 ~ 18120051 (+)
itln3 itln2 coding downstream 210634 18123157 ~ 18126303 (+)
gprc5c gprc5c coding downstream 215476 18127999 ~ 18136358 (+)
oxld1 NA coding downstream 237968 18150491 ~ 18153090 (+)
nploc4 nploc4,LOC107561846,LOC107684105,LOC107690944,LOC107755457,LOC107601397 coding downstream 255291 18167814 ~ 18179057 (+)
G198088 NA non-coding upstream 192594 17670180 ~ 17670945 (+)
G198091 NA non-coding upstream 286953 17575940 ~ 17576586 (+)
G198081 LOC108273981 non-coding upstream 289306 17572305 ~ 17574233 (+)
G198084 NA non-coding upstream 294377 17568378 ~ 17569162 (+)
G198083 NA non-coding upstream 298508 17564599 ~ 17565031 (+)
G198170 ldb3,ldb3b,LOC108274368,LOC107749342,LOC107552745 non-coding downstream 2903 17915426 ~ 17918595 (+)
G198174 NA non-coding downstream 21507 17934030 ~ 17934370 (+)
G198177 NA non-coding downstream 25009 17937532 ~ 17937771 (+)
G198213 NA non-coding downstream 72640 17985163 ~ 17985468 (+)
G198279 NA non-coding downstream 225628 18138151 ~ 18139043 (+)
mta3 LOC108273982,LOC108430512,LOC107582777,LOC107728718,LOC107698822 other upstream 291474 17545793 ~ 17572065 (+)
anapc16 anapc16,cj104 other upstream 1000044 16855689 ~ 16863495 (+)
qki2 qki2,LOC108426533,LOC108274051,LOC103029551,LOC107690925,LOC107755469 other upstream 3539258 14287359 ~ 14324281 (+)
tha1 LOC108274193,LOC108426437,LOC102310306,LOC107683136,LOC107722240,LOC107581676 other upstream 3829396 14013573 ~ 14034143 (+)
tcf7l2 tcf7l2 other upstream 4304454 13483301 ~ 13559085 (+)
pde6gb pde6g,LOC102781464,LOC103367935,LOC102221623 other downstream 242622 18155145 ~ 18160086 (+)
G198737 ppp2r2d,LOC107706599,LOC107653113,LOC107582184,LOC107553689 other downstream 529363 18441886 ~ 18510159 (+)
si:ch211-221j21.3 LOC108273429 other downstream 893554 18806077 ~ 18812262 (+)
LOC113527713 fam196a other downstream 1614119 19526642 ~ 19566684 (+)
si:ch211-216b21.2 LOC108273439,LOC107082319,LOC108429207,LOC107704231,LOC105932487,LOC108246656,LOC108274355,LOC102229454,LOC106946734 other downstream 3544868 21457391 ~ 21500929 (+)

Expression


Co-expression Network