pde6gb (pde6g,LOC102781464,LOC103367935,LOC102221623)


Basic Information

Item Value
gene id pde6gb
gene name pde6g,LOC102781464,LOC103367935,LOC102221623
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 18155145 ~ 18160086 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU234778
CAGCGTAGACACCCACTCCTCCAGCAGTGACGGAGACACATACAACGAGCGGTGCTGCGCACATCCAGCCTGGCAGTGTAATATCAGACTGAAGCTCTACATCAGGGAGAGAGAATACAGAGGGGGTTGAACACAAAACAACCACGAACCATCAGTGGTTTCATCAAAACAACCAACAGCTATGAATCTCGAGCCCCCTAAATCCGAATTTAAGTCGGCCACTCGGGTGACCGGAGGCCCAGCCACGCCACGCAAAGGCCCACCCAAATTTAAACAGAGGCAGACTCGCCAGTTTAAGAGCAAACCACCAAAGAAGGGCATCCAGGGATTTGGAGACGATATTCCTGGTATGGAAGGTTTAGGCACTGACATCACAGTCATCTGCCCTTGGGAGGCCTTCAGCCACTTGGAGCTGCACGAGCTGGCTCAATACGGCATCATCTGAGTCCACCATCTTCCCACCATCCTCTTCACTTTCCCCTTCCATTCTGCCTCCACCCTGGCCATGGGCTCCTGTGGGTCcatttgcacacacaccttATCATAGAACATtgcaaaaaatggaaaaatcagagcaaaaaacaaacaaacaaacaaacaaacaaacaaaaaacttacCTAACTGTCCAGCtcatgg
>XM_026915679.2
AAAGCCCAGCGTAGACACCCACTCCTCCAGCAGTGACGGAGACACATACAACGAGCGGTGCTGCGCACATCCAGCCTGGCAGTGTAATATCAGACTGAAGCTCTACATCAGGGAGAGAGAATACAGAGGGGGTTGAACACAAAACAACCACGAACCATCAGTGGTTTCATCAAAACAACCAACAGCTATGAATCTCGAGCCCCCTAAATCCGAATTTAAGTCGGCCACTCGGGTGACCGGAGGCCCAGCCACGCCACGCAAAGGCCCACCCAAATTTAAACAGAGGCAGACTCGCCAGTTTAAGAGCAAACCACCAAAGAAGGGCATCCAGGGATTTGGAGACGATATTCCTGGTATGGAAGGTTTAGGCACTGACATCACAGTCATCTGCCCTTGGGAGGCCTTCAGCCACTTGGAGCTGCACGAGCTGGCTCAATACGGCATCATCTGAGTCCACCATCTTCCCACCATCCTCTTCACTTTCCCCTTCCATTCTGCCTCCACCCTGGCCATGGGCTCCTGTGGGTCcatttgcacacacaccttATCATAGAACATtgcaaaaaatggaaaaatcagagcaaaaaacaaacaaacaaacaaacaaacaaacaaaaaacttacCTAACTGTCCAGCtcatggtttctttcttttctgctcaTAAATTAACTCAGACCAACATAAATGTCTGTGATTGACTTGTTGTCTGTCAGATCGCAATCTGTTATATTAGAGGTATTCGTTTCATTCTTTCTCCATTCCCATTTGATCTCTTCTTTCAGTTCTCTATCCTCCTTTCTTTTGGAACAGAACTTCAAACTTAAGCAAGCAAGACAGCCTCAAAGTGAGTATAAGTGTTGCACCCGTGAAATGCTCGGCTTCTCATTTCACGTGTCCCAGCCCCTCTGGAGACATCTTGGAGGtctatctatttttttctttctttttattttttaaaaaaaaggtcataCTCCTGTAGACATGGGATACCAGCTGACTGACAAAGaataaatttgcattaaaaaaacaaaacaaaacaaaacaaaaacacttccaCTAATTTTGCTGATATACTGGCACTTTATCCCTTGTCctactttattattaatcttatcATACCTACTCCTGCACTCAGGCTTCAAAACGTGCTCATTGTTAAGGTTAGGACTTCTCAGAAAAACAAACTGCCACTTTTTTGGCTGTCTTGCAATCTCAGGACCACCTGATGTGTCCACAGCTTGGTTTTTATAGCAGttttaaggaaaataaagaaGCCAGAACAGCAAGTCAAAGACACAGTTAAATGTGCTGCATTATTAAAACTTGTTTGATTAAAGTTTAGTGCATGGTTCAGGCGATTACGATTGGGAAAGTGTTAAATCGGTCTGTTTTGTGTCTTCTTTAACTGCATGCTTGATctgattattcattattcagtatCTTTCATACTTACACGGCATCATTCattctcactgtgtctgtctgctgtctttctgtctccactTTGCTGTTTCAAATCCATAGCCTAATTTAAATTCCATCGAATTCTTACTGATTATCTTTGCATATGTCATGTGTATATTAAACCATCATAACCTGATTTCATTTGTACATTCTGTAAAGTGAATTGTTCCTTTCATAGGTTTCCTTATTCATTATACAGTCTTTATACACTCTTTATCTATTGGATGCTGCATTGTGCTgtgcggcgtgtgtgtgtgtgtgtgtgttgttgtgtgttgaaTAGTCTCATTTGAAATATTCTGCctaatttcttcatttatttacagtggcaCACTGCTTATCCTCCACGCAATCCCTCACAGTACTCTTTATACTGAACTGACTTGACATGTTTTGCATaatctcaaacatttatatCAACTCTCACCCAGTTTCCTCCTAAACTCTCTGAACTTGGATGATTTGAAGATTGTAAGGGCGGTTTTGCAGCATTTTACTCCCTGGATCTGTTGGTATGTTTGCACACGAGATGacaaatgcataaaatctttGACAGTTTACTCCATGGCATGACTGTCTGTAATCAGTGACTGAAGTAACGGTGTTTCTGCTCTACAGGATGAGATCaaaataaa

Function

symbol description
pde6g Predicted to enable enzyme inhibitor activity. Predicted to be involved in positive regulation of G protein-coupled receptor signaling pathway and positive regulation of epidermal growth factor receptor signaling pathway. Predicted to act upstream of or within positive regulation of MAPK cascade. Predicted to be located in photoreceptor disc membrane and plasma membrane. Predicted to be active in photoreceptor outer segment membrane. Implicated in retinitis pigmentosa 57.

NR:

description
Retinal rod rhodopsin-sensitive cGMP 3,5-cyclic phosphodiesterase subunit gamma

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0007601 visual perception biological_process
GO:0030553 cGMP binding molecular_function
GO:0004114 3',5'-cyclic-nucleotide phosphodiesterase activity molecular_function

KEGG:

id description
K13759 PDE6G; retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit gamma

RNA

RNA id representative length rna type GC content exon number start site end site
TU234778 False 637 TUCP 0.50 4 18155151 18158629
XM_026915679.2 True 2100 mRNA 0.41 4 18155145 18160086

Neighbor

gene id symbol gene type direction distance location
oxld1 NA coding upstream 2055 18150491 ~ 18153090 (+)
gprc5c gprc5c coding upstream 18787 18127999 ~ 18136358 (+)
itln3 itln2 coding upstream 28842 18123157 ~ 18126303 (+)
gpr142 LOC108274175,LOC103030394,LOC108429827,LOC107690947,LOC107755455 coding upstream 35094 18109639 ~ 18120051 (+)
mmrn2b LOC108273952 coding upstream 276863 17868862 ~ 17878282 (+)
nploc4 nploc4,LOC107561846,LOC107684105,LOC107690944,LOC107755457,LOC107601397 coding downstream 7728 18167814 ~ 18179057 (+)
rnf213b LOC108273713 coding downstream 25252 18185338 ~ 18226812 (+)
cep131 cep131,LOC107755458,LOC107690939 coding downstream 67296 18227382 ~ 18254419 (+)
LOC113527195 NA coding downstream 98885 18258971 ~ 18271510 (+)
st6galnac NA coding downstream 121393 18281479 ~ 18290560 (+)
G198279 NA non-coding upstream 16102 18138151 ~ 18139043 (+)
G198213 NA non-coding upstream 169677 17985163 ~ 17985468 (+)
G198177 NA non-coding upstream 217374 17937532 ~ 17937771 (+)
G198174 NA non-coding upstream 220775 17934030 ~ 17934370 (+)
G198170 ldb3,ldb3b,LOC108274368,LOC107749342,LOC107552745 non-coding upstream 236550 17915426 ~ 17918595 (+)
G198282 NA non-coding downstream 1588 18161674 ~ 18177516 (+)
LOC117598699 NA non-coding downstream 2632 18162718 ~ 18167376 (+)
G198311 NA non-coding downstream 188878 18348964 ~ 18349413 (+)
G198722 NA non-coding downstream 257997 18418083 ~ 18419984 (+)
G198767 NA non-coding downstream 365582 18525668 ~ 18531296 (+)
mta3 LOC108273982,LOC108430512,LOC107582777,LOC107728718,LOC107698822 other upstream 583080 17545793 ~ 17572065 (+)
anapc16 anapc16,cj104 other upstream 1291650 16855689 ~ 16863495 (+)
qki2 qki2,LOC108426533,LOC108274051,LOC103029551,LOC107690925,LOC107755469 other upstream 3830864 14287359 ~ 14324281 (+)
tha1 LOC108274193,LOC108426437,LOC102310306,LOC107683136,LOC107722240,LOC107581676 other upstream 4121002 14013573 ~ 14034143 (+)
tcf7l2 tcf7l2 other upstream 4596060 13483301 ~ 13559085 (+)
G198737 ppp2r2d,LOC107706599,LOC107653113,LOC107582184,LOC107553689 other downstream 281800 18441886 ~ 18510159 (+)
si:ch211-221j21.3 LOC108273429 other downstream 645991 18806077 ~ 18812262 (+)
LOC113527713 fam196a other downstream 1366556 19526642 ~ 19566684 (+)
si:ch211-216b21.2 LOC108273439,LOC107082319,LOC108429207,LOC107704231,LOC105932487,LOC108246656,LOC108274355,LOC102229454,LOC106946734 other downstream 3297305 21457391 ~ 21500929 (+)
G200571 NA other downstream 3842738 22002824 ~ 22003274 (+)

Expression


Co-expression Network