G198279


Basic Information

Item Value
gene id G198279
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 18138151 ~ 18139043 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU234779
tgtgtgtgtgtgtgtgtgtgtgtgtgtatatatatatatatatatataaagtaagtGTCTCATGGTTCATCAATAGCttgatgtgtatttgtgtatatgtggtTTGGTTTTCATTTGCGTGGAGACAGTCAAAGccctggctgtgtgtgtgaaagtttcAACCTGATCGTTAGGACAGCATGAAGATAAGATCCCAAAGAGAAATGTATCAAACGGAAAAATTCCCGTCTGTCATAGTCAGTGCCCACAATATTTACATAGCCACAGTAGATAAGTCTGACTTTTCTACCTACAGGCTTAGATGAGTCTCTCAGCACGCAGATTGCAGCATAAGGTTTTTTAAGGGCAGCCAATTATAGGTTTACATTCAAGGCCTTTTCTAtaagctgtaaatatttttctaGGCAAAATATGGCCTTGTTATTACTAGACATGAGATTAGAGAGTATTATTAAAGTgaaatcttaatttttttcattcagtaaGCTTTGGTGCAACATTTCATGACTTCTAGAACATGTGTGAGTATCTATGTACACTATGCCTTTTTTCCAACAAGAGAGGACAAGAAataatttctattattattattattattattattattattccattatGCACCAAGCCTTTACTGTGCATCACACCTTTACGTGATTATTGACATGGTTATAATTCAATGATATAAGCCATGGGTGTGTTTCCAACATTATGAAACTATTTCCGCATACTTTATTTATggtatttaaacattaaactcaaacaacattcttttaaaataataattgtaaagaCTATGGGCCATTtctcaaataaaatatattggactacatataaaaatatttgcatttagCTGTATGATTTGAAACCCa

Function

GO:

id name namespace
GO:0050878 regulation of body fluid levels biological_process
GO:0051180 vitamin transport biological_process
GO:0001775 cell activation biological_process
GO:0030168 platelet activation biological_process
GO:0009611 response to wounding biological_process
GO:0007596 blood coagulation biological_process
GO:0007599 hemostasis biological_process
GO:0050817 coagulation biological_process
GO:0042060 wound healing biological_process

KEGG:

id description
ko04610 Complement and coagulation cascades

RNA

RNA id representative length rna type GC content exon number start site end site
TU234779 True 869 lncRNA 0.33 2 18138151 18139043

Neighbor

gene id symbol gene type direction distance location
gprc5c gprc5c coding upstream 1793 18127999 ~ 18136358 (+)
itln3 itln2 coding upstream 11848 18123157 ~ 18126303 (+)
gpr142 LOC108274175,LOC103030394,LOC108429827,LOC107690947,LOC107755455 coding upstream 18100 18109639 ~ 18120051 (+)
mmrn2b LOC108273952 coding upstream 259869 17868862 ~ 17878282 (+)
glud1b glud1b,LOC108273953,LOC107700126,LOC107739271,LOC107698813,LOC108430434,LOC107749346,LOC107550058 coding upstream 287293 17832805 ~ 17850858 (+)
oxld1 NA coding downstream 11448 18150491 ~ 18153090 (+)
nploc4 nploc4,LOC107561846,LOC107684105,LOC107690944,LOC107755457,LOC107601397 coding downstream 28771 18167814 ~ 18179057 (+)
rnf213b LOC108273713 coding downstream 46295 18185338 ~ 18226812 (+)
cep131 cep131,LOC107755458,LOC107690939 coding downstream 88339 18227382 ~ 18254419 (+)
LOC113527195 NA coding downstream 119928 18258971 ~ 18271510 (+)
G198213 NA non-coding upstream 152683 17985163 ~ 17985468 (+)
G198177 NA non-coding upstream 200380 17937532 ~ 17937771 (+)
G198174 NA non-coding upstream 203781 17934030 ~ 17934370 (+)
G198170 ldb3,ldb3b,LOC108274368,LOC107749342,LOC107552745 non-coding upstream 219556 17915426 ~ 17918595 (+)
G198158 NA non-coding upstream 225628 17863539 ~ 17912523 (+)
G198282 NA non-coding downstream 22631 18161674 ~ 18177516 (+)
LOC117598699 NA non-coding downstream 23675 18162718 ~ 18167376 (+)
G198311 NA non-coding downstream 209921 18348964 ~ 18349413 (+)
G198722 NA non-coding downstream 279040 18418083 ~ 18419984 (+)
G198767 NA non-coding downstream 386625 18525668 ~ 18531296 (+)
mta3 LOC108273982,LOC108430512,LOC107582777,LOC107728718,LOC107698822 other upstream 566086 17545793 ~ 17572065 (+)
anapc16 anapc16,cj104 other upstream 1274656 16855689 ~ 16863495 (+)
qki2 qki2,LOC108426533,LOC108274051,LOC103029551,LOC107690925,LOC107755469 other upstream 3813870 14287359 ~ 14324281 (+)
tha1 LOC108274193,LOC108426437,LOC102310306,LOC107683136,LOC107722240,LOC107581676 other upstream 4104008 14013573 ~ 14034143 (+)
tcf7l2 tcf7l2 other upstream 4579066 13483301 ~ 13559085 (+)
pde6gb pde6g,LOC102781464,LOC103367935,LOC102221623 other downstream 16102 18155145 ~ 18160086 (+)
G198737 ppp2r2d,LOC107706599,LOC107653113,LOC107582184,LOC107553689 other downstream 302843 18441886 ~ 18510159 (+)
si:ch211-221j21.3 LOC108273429 other downstream 667034 18806077 ~ 18812262 (+)
LOC113527713 fam196a other downstream 1387599 19526642 ~ 19566684 (+)
si:ch211-216b21.2 LOC108273439,LOC107082319,LOC108429207,LOC107704231,LOC105932487,LOC108246656,LOC108274355,LOC102229454,LOC106946734 other downstream 3318348 21457391 ~ 21500929 (+)

Expression


Co-expression Network