G198311


Basic Information

Item Value
gene id G198311
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 18348964 ~ 18349413 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU234820
TTTCTGCTGCAACAATGCAGCAAAGGAGtttagctttttctttttagagGGCTCAGTAGGTGTGTCTTCTTTTCTCTGATATACTTACTGCAACAATGCATTGTCAGAGGAAAGTAGTAGTCAGCAGCATTCTCATAGCCTGCAAGGCACATTTAACACATCACTATCAGCATTAAATTCAGTTAGGGAACAGTTTGATAACTGCCCATCAAAAATGCTCAGGTCTCAAACATTGGGCCTTGATCATGTCCACCAACCACATCCATCAGGACCTAATAGAATAAACAGCTTGCCCTGGAATTTGAGAGGCTGAGAAAGTTGATAAAAGTTAAACAATTAACAAGTGATGAAAATGACTGCAATGAAATTACTGTAGATCGCTCTTTGCTTGGTGTCCACAGAATATCAAGCGTCAAACACTAGAATTACTGTCGCCCAAGGTGTGTATCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU234820 True 450 lncRNA 0.40 1 18348964 18349413

Neighbor

gene id symbol gene type direction distance location
aatkb LOC108273714 coding upstream 607 18300226 ~ 18348357 (+)
st6galnac NA coding upstream 58404 18281479 ~ 18290560 (+)
LOC113527195 NA coding upstream 77454 18258971 ~ 18271510 (+)
cep131 cep131,LOC107755458,LOC107690939 coding upstream 94545 18227382 ~ 18254419 (+)
rnf213b LOC108273713 coding upstream 122152 18185338 ~ 18226812 (+)
LOC113527495 LOC108273717 coding downstream 72140 18421553 ~ 18429688 (+)
bnip3 bnip3,LOC107553688,LOC107653114,LOC107582186,LOC107706607 coding downstream 148832 18498245 ~ 18507858 (+)
LOC113527622 tcerg1l coding downstream 264778 18614191 ~ 18702757 (+)
ebf3a ebf3,ebf3a,LOC107582179,LOC107553694,LOC107745698 coding downstream 478223 18827636 ~ 18920766 (+)
LOC113527107 NA coding downstream 1020913 19370326 ~ 19373349 (+)
G198282 NA non-coding upstream 171448 18161674 ~ 18177516 (+)
LOC117598699 NA non-coding upstream 181588 18162718 ~ 18167376 (+)
G198279 NA non-coding upstream 209921 18138151 ~ 18139043 (+)
G198213 NA non-coding upstream 363496 17985163 ~ 17985468 (+)
G198177 NA non-coding upstream 411193 17937532 ~ 17937771 (+)
G198722 NA non-coding downstream 68670 18418083 ~ 18419984 (+)
G198767 NA non-coding downstream 176255 18525668 ~ 18531296 (+)
G198818 NA non-coding downstream 330760 18680173 ~ 18698503 (+)
G198876 NA non-coding downstream 354062 18703475 ~ 18703699 (+)
G198886 NA non-coding downstream 418980 18768393 ~ 18768690 (+)
pde6gb pde6g,LOC102781464,LOC103367935,LOC102221623 other upstream 188878 18155145 ~ 18160086 (+)
mta3 LOC108273982,LOC108430512,LOC107582777,LOC107728718,LOC107698822 other upstream 776899 17545793 ~ 17572065 (+)
anapc16 anapc16,cj104 other upstream 1485469 16855689 ~ 16863495 (+)
qki2 qki2,LOC108426533,LOC108274051,LOC103029551,LOC107690925,LOC107755469 other upstream 4024683 14287359 ~ 14324281 (+)
tha1 LOC108274193,LOC108426437,LOC102310306,LOC107683136,LOC107722240,LOC107581676 other upstream 4314821 14013573 ~ 14034143 (+)
G198737 ppp2r2d,LOC107706599,LOC107653113,LOC107582184,LOC107553689 other downstream 92473 18441886 ~ 18510159 (+)
si:ch211-221j21.3 LOC108273429 other downstream 456664 18806077 ~ 18812262 (+)
LOC113527713 fam196a other downstream 1177229 19526642 ~ 19566684 (+)
si:ch211-216b21.2 LOC108273439,LOC107082319,LOC108429207,LOC107704231,LOC105932487,LOC108246656,LOC108274355,LOC102229454,LOC106946734 other downstream 3107978 21457391 ~ 21500929 (+)
G200571 NA other downstream 3653411 22002824 ~ 22003274 (+)

Expression


Co-expression Network