G198876


Basic Information

Item Value
gene id G198876
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 18703475 ~ 18703699 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU235453
GCCTGATCCCCAAATCCCactttctcatgaaaataaatgtcagaGCTGTCTATCATGTGACTTTGTGACTGTGTCACTACTTCAtagggaaacaaacaaacaaacgaaaatTGAAATAGTAGAAAATGTGAAGGACATATTGGTCAGGGAGACGCACCCAATTATTATTTGTTCTGCAGCAAGAACTGGAAACATACAGGGCAAacactaattatttttatacca

Function

GO: NA

KEGG:

id description
ko05033 Nicotine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
TU235453 True 225 lncRNA 0.37 1 18703475 18703699

Neighbor

gene id symbol gene type direction distance location
LOC113527622 tcerg1l coding upstream 718 18614191 ~ 18702757 (+)
bnip3 bnip3,LOC107553688,LOC107653114,LOC107582186,LOC107706607 coding upstream 195617 18498245 ~ 18507858 (+)
LOC113527495 LOC108273717 coding upstream 273787 18421553 ~ 18429688 (+)
aatkb LOC108273714 coding upstream 355118 18300226 ~ 18348357 (+)
st6galnac NA coding upstream 412915 18281479 ~ 18290560 (+)
ebf3a ebf3,ebf3a,LOC107582179,LOC107553694,LOC107745698 coding downstream 123937 18827636 ~ 18920766 (+)
LOC113527107 NA coding downstream 666627 19370326 ~ 19373349 (+)
c12h10orf90 LOC108273407 coding downstream 990699 19694398 ~ 19719754 (+)
LOC113527774 LOC108273823,LOC108429440 coding downstream 1023972 19727671 ~ 19825878 (+)
dhx32a LOC108273822,LOC108429422 coding downstream 1126903 19830602 ~ 19841026 (+)
G198818 NA non-coding upstream 4972 18680173 ~ 18698503 (+)
G198767 NA non-coding upstream 172179 18525668 ~ 18531296 (+)
G198722 NA non-coding upstream 283491 18418083 ~ 18419984 (+)
G198311 NA non-coding upstream 354062 18348964 ~ 18349413 (+)
G198282 NA non-coding upstream 525959 18161674 ~ 18177516 (+)
G198886 NA non-coding downstream 64694 18768393 ~ 18768690 (+)
G198901 NA non-coding downstream 119934 18823633 ~ 18824561 (+)
LOC113527366 NA non-coding downstream 605784 19309483 ~ 19314815 (+)
G199051 NA non-coding downstream 722681 19426380 ~ 19426595 (+)
G199161 trim65 non-coding downstream 1088935 19792634 ~ 19856480 (+)
G198737 ppp2r2d,LOC107706599,LOC107653113,LOC107582184,LOC107553689 other upstream 193316 18441886 ~ 18510159 (+)
pde6gb pde6g,LOC102781464,LOC103367935,LOC102221623 other upstream 543389 18155145 ~ 18160086 (+)
mta3 LOC108273982,LOC108430512,LOC107582777,LOC107728718,LOC107698822 other upstream 1131410 17545793 ~ 17572065 (+)
anapc16 anapc16,cj104 other upstream 1839980 16855689 ~ 16863495 (+)
qki2 qki2,LOC108426533,LOC108274051,LOC103029551,LOC107690925,LOC107755469 other upstream 4379194 14287359 ~ 14324281 (+)
si:ch211-221j21.3 LOC108273429 other downstream 102378 18806077 ~ 18812262 (+)
LOC113527713 fam196a other downstream 822943 19526642 ~ 19566684 (+)
si:ch211-216b21.2 LOC108273439,LOC107082319,LOC108429207,LOC107704231,LOC105932487,LOC108246656,LOC108274355,LOC102229454,LOC106946734 other downstream 2753692 21457391 ~ 21500929 (+)
G200571 NA other downstream 3299125 22002824 ~ 22003274 (+)
srsf2a srsf2,LOC106612293,LOC107702465,LOC107566380 other downstream 3304812 22008511 ~ 22012304 (+)

Expression


Co-expression Network