G199051


Basic Information

Item Value
gene id G199051
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 19426380 ~ 19426595 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU235663
ACAGACAGTGCTAAGGGATTTGAGTGGACCTCTGTTGGGGTTGTGGGTATTCTTTCACTGATTGGTAGCTTGGGACTGAGCCTCATTCCAACTGCCTGTAGCCCATTACCTCCTGTGCAAACACTGGCACACTTAGTATAATACAGCAAGGAGCATCTGCCCTGTCTAGTGTTTTACACACTCTGAAACACTTACGTCATGAATCGGGTAAGGTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU235663 True 216 lncRNA 0.47 1 19426380 19426595

Neighbor

gene id symbol gene type direction distance location
LOC113527107 NA coding upstream 53031 19370326 ~ 19373349 (+)
ebf3a ebf3,ebf3a,LOC107582179,LOC107553694,LOC107745698 coding upstream 505614 18827636 ~ 18920766 (+)
LOC113527622 tcerg1l coding upstream 723623 18614191 ~ 18702757 (+)
bnip3 bnip3,LOC107553688,LOC107653114,LOC107582186,LOC107706607 coding upstream 918522 18498245 ~ 18507858 (+)
LOC113527495 LOC108273717 coding upstream 996692 18421553 ~ 18429688 (+)
c12h10orf90 LOC108273407 coding downstream 267803 19694398 ~ 19719754 (+)
LOC113527774 LOC108273823,LOC108429440 coding downstream 301076 19727671 ~ 19825878 (+)
dhx32a LOC108273822,LOC108429422 coding downstream 404007 19830602 ~ 19841026 (+)
wbp2 wbp2,LOC107549326,LOC107567801,LOC107740862,LOC107578800,LOC107666818 coding downstream 418915 19845510 ~ 19853750 (+)
mrpl38 mrpl38 coding downstream 436717 19863312 ~ 19871403 (+)
LOC113527366 NA non-coding upstream 111565 19309483 ~ 19314815 (+)
G198901 NA non-coding upstream 601819 18823633 ~ 18824561 (+)
G198886 NA non-coding upstream 657690 18768393 ~ 18768690 (+)
G198876 NA non-coding upstream 722681 18703475 ~ 18703699 (+)
G198818 NA non-coding upstream 727877 18680173 ~ 18698503 (+)
G199161 trim65 non-coding downstream 366039 19792634 ~ 19856480 (+)
G199187 NA non-coding downstream 450146 19876741 ~ 19885988 (+)
G199216 NA non-coding downstream 517649 19944244 ~ 19944466 (+)
G199217 psd non-coding downstream 524192 19950787 ~ 19953308 (+)
LOC113527335 NA non-coding downstream 808220 20234815 ~ 20251474 (+)
si:ch211-221j21.3 LOC108273429 other upstream 614118 18806077 ~ 18812262 (+)
G198737 ppp2r2d,LOC107706599,LOC107653113,LOC107582184,LOC107553689 other upstream 916221 18441886 ~ 18510159 (+)
pde6gb pde6g,LOC102781464,LOC103367935,LOC102221623 other upstream 1266294 18155145 ~ 18160086 (+)
mta3 LOC108273982,LOC108430512,LOC107582777,LOC107728718,LOC107698822 other upstream 1854315 17545793 ~ 17572065 (+)
anapc16 anapc16,cj104 other upstream 2562885 16855689 ~ 16863495 (+)
LOC113527713 fam196a other downstream 100047 19526642 ~ 19566684 (+)
si:ch211-216b21.2 LOC108273439,LOC107082319,LOC108429207,LOC107704231,LOC105932487,LOC108246656,LOC108274355,LOC102229454,LOC106946734 other downstream 2030796 21457391 ~ 21500929 (+)
G200571 NA other downstream 2576229 22002824 ~ 22003274 (+)
srsf2a srsf2,LOC106612293,LOC107702465,LOC107566380 other downstream 2581916 22008511 ~ 22012304 (+)
LOC113527202 NA other downstream 2587211 22013806 ~ 22026481 (+)

Expression


Co-expression Network