G199161 (trim65)


Basic Information

Item Value
gene id G199161
gene name trim65
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 19792634 ~ 19856480 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU235786
taaaaaaaaaaaaaaattaaaaaaaaaagtgtctttaaAACCAGATTcaacctctttttttaaatgatactgGAAATATGTGCTTCAGTGTTGTCACCATTTAAAGTGGCTCAAAAAAGTTAAATGACTACTGGAATGCTCAGTCTTCGAAGTAAAACAAATCTACAACCAGAAGATGAACAAGGATAGTGACAGAATTTGCAAACGAGCTATTAGTGAGAGTGTCCTAAAGTTTGCCACTgtagtgtttctttttctcGCAGAGTGTAACTTGTAGTACGTCAAACTTAAAAAGCTCAAAACCATTTAGGTTTTAGATATATTGTACAGGTTATTCACCGTGACCATTGTCAGCGACGTCATAGACATTGTACCGCACGACCACATTCATGCACCTGAAGAACAAAGAGTCTACAGATGAAAAAGAGGAGCTACAACATGAGAAAACTGTGAGTGAATCTTAAAGTGACCCTTTACACCTGCGTATAGCGAGAAGGAACGAAGTTGTcctaaatgtttaatgttatgtacAGAAGAATAAATTCCAGATTACTAGACAAACGagtaaatgtgtgaaatgaatgaatgatctgGATTTTCATTCATATGTGGCTTGACTTGCTCTTGGCAGAAACAAAACCAGTGACTAATTATTTAACCTCTTAAACCTGTGAGTACACATTGAGCTCTTGGCACTCTAAGAAATGTTAAAGTTTTATTTCTGCTCAAGATTTTGGATATTACAGTACAAATATGCAGTAAATCATTAACTCAGACTGCAGACTGAGCTGTCACTCATGAAGAATTGTGCAGCTCTATGATATAGTAGAGCTAAAGGAGTGGAAAGAGATTGATCTTAACTTCACTGACCACTTGTCTGTCTGTGAAAACACCATTTTCAGGTAAAGTTGTTTGGGTAGAAAAGCGTGCCGTATTGTGACGCCATGGCTGGCTTTGTAGTACCAAACATTAGCAGTAGCCACAAAGTGCATGAATTGCAACATAAAGGTTAACTTGATTTTCAGTGTACACAAATctaacatcaaaaaaaaaattatattagtgAATAAGTTTGttcacattattaaataaaaagtgtaactTGTGCTGGAACATCTGGTGTTTGGGTGTTCTGTAATAGTCTTTGAGCACAGTTTTTCTATTAAAAGTCTAGGTTTCAGGAAGTGGCTTTTGCTGAAAGCATTTGTTAGTGGTGAGGATCTCCACAATAGTTCTTGGAGGCCTGGAACTACTTTCCTACTCTAAGTGTCCCTATTGTGTGCTTGTTCATTTGCTGCATTTGCTTCAGTTAGAACGTGTTTTATGAGCTGAATCACGGTGTTTTATGAACTTCAGTTCCGCAccctttgttttgaaaagttgTTCACATTGGGCAGAGAGTGACACTGACCCCCTCCCCGATCCAGCAGGCAGGATAGAGCTCATGGGAAAAGACGCAGTGGAAGGCGTGCAGCCTCACCTGGTTCTCCCCATAATAAGCCAGAGTGCCTTCGTCATAGTCCAGCAGCATGCCAATGCGCAGAGGCCGTTTGTTTAACTGCAGCTCGCCTGTTACAGGCTCTCCATGGCTACCGTGCCAAGCGGTGAGCTGGCGCTCATTCAGCTGCAGGCTCCATGACAGCTCATTCATTCCCAGCATGGACGTCCTGCCTTTCTCCTTGCGCGGGATGCCGGGGTACGTCACACCTACATACGCCCACGGTTTGGACACCTCCAGCTCCCAGTAGTGGCGACCGTGTGTGAAATTCTCAAAGCACAACACTTGCCAGGTGTGGTCAAAGCGTGCCTCGTCAGCTGGCACTGGATGAGGCCCTGAGATCAGGTGCTCCGCCCGCTGGTTGTTCTGAGAAAGCATGAGGTGAGCGTTGGCTGTGCgagggtcaaaggtc

Function

symbol description
trim65 Predicted to enable zinc ion binding activity. Orthologous to human TRIM65 (tripartite motif containing 65).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU235786 True 1910 lncRNA 0.42 2 19792634 19856480

Neighbor

gene id symbol gene type direction distance location
c12h10orf90 LOC108273407 coding upstream 72880 19694398 ~ 19719754 (+)
LOC113527107 NA coding upstream 419285 19370326 ~ 19373349 (+)
ebf3a ebf3,ebf3a,LOC107582179,LOC107553694,LOC107745698 coding upstream 871868 18827636 ~ 18920766 (+)
LOC113527622 tcerg1l coding upstream 1089877 18614191 ~ 18702757 (+)
bnip3 bnip3,LOC107553688,LOC107653114,LOC107582186,LOC107706607 coding upstream 1284776 18498245 ~ 18507858 (+)
mrpl38 mrpl38 coding downstream 6832 19863312 ~ 19871403 (+)
gpx9 LOC108273566,LOC108439462 coding downstream 156227 20012707 ~ 20017504 (+)
LOC113527727 LOC108274321 coding downstream 330325 20186805 ~ 20200272 (+)
LOC113527333 LOC108273935 coding downstream 346114 20202594 ~ 20228997 (+)
zgc:165653 LOC108274081,LOC108437900,LOC105888795 coding downstream 402394 20258874 ~ 20288139 (+)
G199051 NA non-coding upstream 366039 19426380 ~ 19426595 (+)
LOC113527366 NA non-coding upstream 477819 19309483 ~ 19314815 (+)
G198901 NA non-coding upstream 968073 18823633 ~ 18824561 (+)
G198886 NA non-coding upstream 1023944 18768393 ~ 18768690 (+)
G198876 NA non-coding upstream 1088935 18703475 ~ 18703699 (+)
G199187 NA non-coding downstream 20261 19876741 ~ 19885988 (+)
G199216 NA non-coding downstream 87764 19944244 ~ 19944466 (+)
G199217 psd non-coding downstream 94307 19950787 ~ 19953308 (+)
LOC113527335 NA non-coding downstream 378335 20234815 ~ 20251474 (+)
G199796 NA non-coding downstream 738761 20595241 ~ 20595444 (+)
LOC113527713 fam196a other upstream 225950 19526642 ~ 19566684 (+)
si:ch211-221j21.3 LOC108273429 other upstream 980372 18806077 ~ 18812262 (+)
G198737 ppp2r2d,LOC107706599,LOC107653113,LOC107582184,LOC107553689 other upstream 1282475 18441886 ~ 18510159 (+)
pde6gb pde6g,LOC102781464,LOC103367935,LOC102221623 other upstream 1632548 18155145 ~ 18160086 (+)
mta3 LOC108273982,LOC108430512,LOC107582777,LOC107728718,LOC107698822 other upstream 2220569 17545793 ~ 17572065 (+)
si:ch211-216b21.2 LOC108273439,LOC107082319,LOC108429207,LOC107704231,LOC105932487,LOC108246656,LOC108274355,LOC102229454,LOC106946734 other downstream 1600911 21457391 ~ 21500929 (+)
G200571 NA other downstream 2146344 22002824 ~ 22003274 (+)
srsf2a srsf2,LOC106612293,LOC107702465,LOC107566380 other downstream 2152031 22008511 ~ 22012304 (+)
LOC113527202 NA other downstream 2157326 22013806 ~ 22026481 (+)
mrpl27 mrpl27,LOC107665862,LOC108430158 other downstream 2941662 22798142 ~ 22871284 (+)

Expression


Co-expression Network