G199187


Basic Information

Item Value
gene id G199187
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 19876741 ~ 19885988 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU235814
tcttttgtatgtgtttgttacCTCGAGACTTCAGTAAGCCTGTAATTTCCTGAGCACCAGCTTTGTTGACTGACACATCGAGTGTTCCTGAGTCCACATCTTTCAGGAGAACTCGTGCTGTTTCAAAACTGTCATTCATAGTTGTTGCAATCACACCAGTCGGCCCACGCTTTACCCAGCCACTGCAGTACAACCCTGTACatgtatagacacacacacacacacacacacacacacacgtttggtCTTGAAACGATTTCCCTAGCAGTTACCCTTGCAGTTCTTTGAAACaatgattcattgattcattcagtGATTAAACCAAAAGCAATAGTCTCACGTATACCTACCTGCTCATAGTATGTGATGGATTAAACTAATAAAATGGTGAAGAGAAAtgacttattgtttattttactaaGATAAGCTAAAACAGTGTGGACAGATTTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU235814 True 451 lncRNA 0.40 2 19876741 19885988

Neighbor

gene id symbol gene type direction distance location
mrpl38 mrpl38 coding upstream 5338 19863312 ~ 19871403 (+)
wbp2 wbp2,LOC107549326,LOC107567801,LOC107740862,LOC107578800,LOC107666818 coding upstream 22991 19845510 ~ 19853750 (+)
dhx32a LOC108273822,LOC108429422 coding upstream 35715 19830602 ~ 19841026 (+)
LOC113527774 LOC108273823,LOC108429440 coding upstream 50863 19727671 ~ 19825878 (+)
c12h10orf90 LOC108273407 coding upstream 156987 19694398 ~ 19719754 (+)
gpx9 LOC108273566,LOC108439462 coding downstream 126719 20012707 ~ 20017504 (+)
LOC113527727 LOC108274321 coding downstream 300817 20186805 ~ 20200272 (+)
LOC113527333 LOC108273935 coding downstream 316606 20202594 ~ 20228997 (+)
zgc:165653 LOC108274081,LOC108437900,LOC105888795 coding downstream 372886 20258874 ~ 20288139 (+)
mtr mtr coding downstream 404605 20290593 ~ 20316556 (+)
G199161 trim65 non-coding upstream 20261 19792634 ~ 19856480 (+)
G199051 NA non-coding upstream 450146 19426380 ~ 19426595 (+)
LOC113527366 NA non-coding upstream 561926 19309483 ~ 19314815 (+)
G198901 NA non-coding upstream 1052180 18823633 ~ 18824561 (+)
G198886 NA non-coding upstream 1108051 18768393 ~ 18768690 (+)
G199216 NA non-coding downstream 58256 19944244 ~ 19944466 (+)
G199217 psd non-coding downstream 64799 19950787 ~ 19953308 (+)
LOC113527335 NA non-coding downstream 348827 20234815 ~ 20251474 (+)
G199796 NA non-coding downstream 709253 20595241 ~ 20595444 (+)
G200325 NA non-coding downstream 1498088 21384076 ~ 21386033 (+)
LOC113527713 fam196a other upstream 310057 19526642 ~ 19566684 (+)
si:ch211-221j21.3 LOC108273429 other upstream 1064479 18806077 ~ 18812262 (+)
G198737 ppp2r2d,LOC107706599,LOC107653113,LOC107582184,LOC107553689 other upstream 1366582 18441886 ~ 18510159 (+)
pde6gb pde6g,LOC102781464,LOC103367935,LOC102221623 other upstream 1716655 18155145 ~ 18160086 (+)
mta3 LOC108273982,LOC108430512,LOC107582777,LOC107728718,LOC107698822 other upstream 2304676 17545793 ~ 17572065 (+)
si:ch211-216b21.2 LOC108273439,LOC107082319,LOC108429207,LOC107704231,LOC105932487,LOC108246656,LOC108274355,LOC102229454,LOC106946734 other downstream 1571403 21457391 ~ 21500929 (+)
G200571 NA other downstream 2116836 22002824 ~ 22003274 (+)
srsf2a srsf2,LOC106612293,LOC107702465,LOC107566380 other downstream 2122523 22008511 ~ 22012304 (+)
LOC113527202 NA other downstream 2127818 22013806 ~ 22026481 (+)
mrpl27 mrpl27,LOC107665862,LOC108430158 other downstream 2912154 22798142 ~ 22871284 (+)

Expression


Co-expression Network