G200418


Basic Information

Item Value
gene id G200418
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 21610254 ~ 21610457 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU237153
CAGAGCTTGACCcctgtgtagtaatgtgtagtgtacgaGGGCAGAGCTCGACCCCTGTGTAGTAAATGTGTAGTGTACGAGGGCAGAGCTTGTCCcctgtgtagtaatgtgtagtgtacgaGGGCAGAGCTTGACCcctgtgtagtaatgtgtagtgtacgaGGGCAGAGCTTGTCCcctgtgtagtaatgtgtagtgtacgaG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU237153 True 204 lncRNA 0.51 1 21610254 21610457

Neighbor

gene id symbol gene type direction distance location
pmp22b pmp22,LOC107561836,LOC107692454,LOC107753252,LOC107684480,LOC107597829 coding upstream 457328 21139857 ~ 21152926 (+)
tekt3 tekt3,LOC107753251,LOC107684491 coding upstream 489301 21112476 ~ 21120953 (+)
LOC113527122 NA coding upstream 540790 21062462 ~ 21069464 (+)
lzts2b LOC108274048,LOC108439452 coding upstream 601869 20979187 ~ 21008385 (+)
hhex hhex,LOC107597790,LOC104952083 coding upstream 692230 20912718 ~ 20918024 (+)
unc13d unc13d,LOC107753247,LOC107597824,LOC107755420,LOC107704240,LOC107561838 coding downstream 2501 21612958 ~ 21639584 (+)
kcnj16 LOC108274207 coding downstream 142884 21753341 ~ 21777831 (+)
kcnj2a kcnj2,LOC108274206,LOC108429808,LOC107597836,LOC107704237 coding downstream 172572 21783029 ~ 21790227 (+)
itgb3b itgb3,itgb3b,LOC108430317,LOC107698806,LOC107700113 coding downstream 325958 21936415 ~ 21959218 (+)
nat9 nat9 coding downstream 350661 21961118 ~ 21966747 (+)
G200325 NA non-coding upstream 224221 21384076 ~ 21386033 (+)
G199796 NA non-coding upstream 1014810 20595241 ~ 20595444 (+)
LOC113527335 NA non-coding upstream 1358780 20234815 ~ 20251474 (+)
G199217 psd non-coding upstream 1656946 19950787 ~ 19953308 (+)
G199216 NA non-coding upstream 1665788 19944244 ~ 19944466 (+)
G200420 NA non-coding downstream 29237 21639694 ~ 21643654 (+)
G200430 NA non-coding downstream 42774 21653231 ~ 21654736 (+)
G200555 NA non-coding downstream 363772 21974229 ~ 21978282 (+)
G200556 NA non-coding downstream 368626 21979083 ~ 21979381 (+)
G200559 NA non-coding downstream 375905 21986362 ~ 21987001 (+)
si:ch211-216b21.2 LOC108273439,LOC107082319,LOC108429207,LOC107704231,LOC105932487,LOC108246656,LOC108274355,LOC102229454,LOC106946734 other upstream 109325 21457391 ~ 21500929 (+)
LOC113527713 fam196a other upstream 2043570 19526642 ~ 19566684 (+)
si:ch211-221j21.3 LOC108273429 other upstream 2797992 18806077 ~ 18812262 (+)
G198737 ppp2r2d,LOC107706599,LOC107653113,LOC107582184,LOC107553689 other upstream 3100095 18441886 ~ 18510159 (+)
pde6gb pde6g,LOC102781464,LOC103367935,LOC102221623 other upstream 3450168 18155145 ~ 18160086 (+)
G200571 NA other downstream 392367 22002824 ~ 22003274 (+)
srsf2a srsf2,LOC106612293,LOC107702465,LOC107566380 other downstream 398054 22008511 ~ 22012304 (+)
LOC113527202 NA other downstream 403349 22013806 ~ 22026481 (+)
mrpl27 mrpl27,LOC107665862,LOC108430158 other downstream 1187685 22798142 ~ 22871284 (+)
G201154 NA other downstream 1595209 23205666 ~ 23206379 (+)

Expression


Co-expression Network