G200555


Basic Information

Item Value
gene id G200555
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 21974229 ~ 21978282 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU237306
tgtttattgtttttgtaggtttcatttttataaaagtgATCAGTGTATAGACTCAGTTCATCTCTTCTACTGTGGATCACAGTAATTGCTCCGATGGGTGCAAAGTGACAATAAGACAGAACAAAAGTCTAAATGAATCATTGCTTCGTATGTGTTTAAGATGGAAGCCGTCTCTAACACAATGCAACGTCTGGAGTGTTCTCGGAGACCAAACCTCTATTCGACAGATATAACTTCACTGCACAGCTACACGTCTATTGCATTCAAGGACAAATTCGGCTAAACCCGTAGACCTGCGTCATCTGTGTGACCTTCTGTACTGATGTTGCAGGGgctactgtaaactgtaaatatctACCGCAAATGTACACTTCTTTAAATAACACATGTAGACCACCAGGCTAGTGTTACATGCACCACAGATTTGTGGTctaaggaaaacaaacaaacaaatggacGTAAAAGCTTATTTTGTAGAAATGATTTTTATAACATCACATCGTTATTAATATTCCATTGAACACATCTGACACAACTGAATTGCTAGTTTATTAGTTACTAGATTGATATCGGTAATAAACTGGCGACCTAGCATTTCACAACGATAACAAGTGCTAACTAATATAAAATCAAAAcgggacattttttttttctcaaagagAGATcataaatatgattaaattcAAAATCCTGTCCAGAGTTGTTGTTGACAATGGGCTCAGATATTAGATTATgggtcatttacatttattcatttggcaaatCCAAAGTGTGTCCCTAGCTAAGAAAGTGAGAGgctaaagtttaacattttaTCACCAGACGGTATGACACAGCACAGTATCCTTTCTAATCTCATTCCAaatgtacctttagtgtgtatcttttacctagaaaagtGCATGGAGTGTatatttaaagctttttaaatatccaattatgtaccttaaatcctTTAAAGatgtattCTTGAGTGACAAGGACATATTCAGTTTAGTAGTTTTCCTGAGAGTGTGTTCAGAACGCTTGTGAAGTACCTCCGCCCAACAGGACCTAgaagggatgtaaccaaatacgaatacattattctgaatgaacagatcatttgttctaaacagatacaaataaaagagataaaaaagagGGGCactattagtttttatttttttagaaagcttgccagaaagctatgcagggcatctggttgagactagattTTCATGCGAGTGGACAAATATGAAGCTTGCGGGAAaaacaaagaccacattcattaatgtgaacGTGAACAATACATTTACAACGATGCATTTACTGCAGTTTAAATTACGCTTCTagtttgttcatattttggaaaatacaGCCAACTTAATatgttagaaaatgtcaaaaaacttttagaaacaaggaaaaaaaaacttctggtttaggccacacccacttcaggtttaaatccgaatacagatacagatacggatatttTGAGCCCTAAATAGATAccgatacagatagtggcattgtatTATGGTGCATCCCTAGTACCTACGAAAGTAAATGGAGTTTTCTGAAGTTTGTGAACTTTAAGGACTGATTTACGTTTTACTCAGCGTTTGGTTTACGTGAAGAAACCTAAAGCAGCCAAACAAACTTTCCAGATTTCCATTATACTCATTGAGAATGTAATCAGATCTCTATCATCCAAAACATTACTCCGCTATATACAAAGTAAGAAATcgtgatgtaattttttttggaatacTATTTAGCATGCTGAACTTAAGTGACAAATTATGACTATGATTACATTTGAGCCAATCAGAGGCCTGCACTATAACTAGCTCCAAACATATGACCCTGTTGAGCACTTTTAGTACCTTGGTAAGACGGGGAACCTTATTTAGCACTGGTACCTAATTATAGTACAGGTCATTTGGTTATGGAGATACTGACAAAATGTAGGATCACAGATTTGTTACTGCACTGAGCCGTAACAAGAGGTTTGGGATTTGAACCCATAACCTTCCAGTGACCCAGTTAAGGATTACTGAACAAGTCATAGCTaattcagcagaaaaaaaaagatggaagtCAATTCTGTTTGAAAAATACAATAGAAAATGTAAGTCTGAATTGTCTATCTAACACTGACAAGCGTGtggcacatttttattttctgaatcaGTAAACACTTCTTTAGGATCTTATATAGTACAGTGCACCCATTGTCATGtggaatgcaaaaaaaacatcatatgaCCTGGCATGCCAAAGTCACACTGGCACTTTTGCTTGGCAAATCCCTCGTGCAGTTTTCTACAATCTGCTCCCTGTAATATGTGAAATGTAGCTATCCAGAAACAAGCTAACGCTTAATCAGTAAACAGATATGATTGTACCGTTGTGATATTCAAAGCATTATCTCTGTGATATATGATGGTGGTGGCAGATTTCTTCTCCACTGGCACTGATTTGTTCAGTCGGATGTAGACGTCAGGTGAGGCAGCTTTGTAGCTTTAGGTGATTTTGTGGCTTTGTAACATGCATGATGGTAAGAGCAGCTCAGTGAGGATGTGTTATTGCTCTAAAGTCCAGTTTCTGATGTGAACGAGCAAGCGAATTGGATTGTAAAATCCGCCTTCTGTTTGCTACACCTGTCGCAGTGATAAAGGAAGTGCAAACTTTGATACTGACATTCAAACACTGAATACTCTGGAGTGCAAGTGGATTAAGAAAGGATTATCTGTGCATGCAAACGTTTAGTTAGTTCACGtattcgtgtttttttttttttttaaacgtggTTTAGCCTTAGATCTTCCAGGTGCTTCGACTAAAAAAACAGTGTAAGTGACAATAGACGCATTTCCATACTACAGAAAAAAGTTATATATTaggattaaagcagcagtttgtaatttttacagCCCTCTGCTGAATGTAAGGTGTATTGCTTTTACAATGACAACACTCATAAGCCTTTCCCTCTCCTGAAAATATACTGagttgccttttaaggaaaaggggGGTATACCTGAGCAGCTCTGTTGCAGCTGAGGGCGGAGCTCATTTCTGggctggaaaaatgtaaatagaaccccgaaagttaaaaaaaaagaaaagaaaatctgatTCATTGCATGAAAATATTGCAAATGACAGTTTTTCTATTGTGTCTTTGaaattatgtgtatattatagggatacaaacactttttaaaattacaaactgcacctttaggGTGGTGTGTGTAGCAGGCCACTGGAAGcatgtacaaaatatattacTGTAATTCCTGCAATTTTTTTGACTCAACAGACTCAACTTAACCACTCTGATGTTTTAGTAATTGTAAATTTTTTAGTGAATTGGTTATTCACAGAACAACATCTACATTAAACACTGTCCAATAGTCTACTAATTAAGACTTTGTGATGCTTTCTGGTCCAAGTATGGAAATAGCTCCAGGAACAAAAAACGTTCTTGGAACTAAAATCCAGCCCAGGACTTCATTTGCTCTTGCTTGCTCTGGTGGAAATGCGCCTAAAGTGACTAAGTTCCTGTGGTTTAAACACTAATTAATACTTAACCGGAAAGTCAGAACTCCTATTTAAGTCAGACGTTCATGAGGCCATTTTAATCAAATCCACTGGTCTGTTCATCAGGAGTGTTTCTCCACATGCATTGATAAAGGAGCAGAGTGAAGGTTGAAGAGAAAGCCACTGCTGAATAGCACTCTTATTTGAGATTTGAGAAACAAACTGTTCTGGGTTTTTTAGATCAGAGGGTGAGATGAGGAGTCGGCATGGGAGTCAGATGCTGGAGGGATGCCTTTTACACAGCTAGCGGTCCGTGGCatgtttttggtgtgtttttcgGGCTCGTCCCCATGTTGGTGACACTCTTCTCATCCAGATTGATGTTGCTGTTAGAGGCATGCTGAAGCAGAGACTCCTGGGAATGCCAGTTGGCTTCCAGGTAGAGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU237306 True 3981 lncRNA 0.37 2 21974229 21978282

Neighbor

gene id symbol gene type direction distance location
nat9 nat9 coding upstream 7482 21961118 ~ 21966747 (+)
itgb3b itgb3,itgb3b,LOC108430317,LOC107698806,LOC107700113 coding upstream 15011 21936415 ~ 21959218 (+)
kcnj2a kcnj2,LOC108274206,LOC108429808,LOC107597836,LOC107704237 coding upstream 184002 21783029 ~ 21790227 (+)
kcnj16 LOC108274207 coding upstream 196398 21753341 ~ 21777831 (+)
unc13d unc13d,LOC107753247,LOC107597824,LOC107755420,LOC107704240,LOC107561838 coding upstream 334645 21612958 ~ 21639584 (+)
LOC113527221 NA coding downstream 50807 22029089 ~ 22035625 (+)
si:ch211-119c20.2 LOC108274060 coding downstream 59690 22037972 ~ 22089270 (+)
LOC113527624 NA coding downstream 146054 22124336 ~ 22126646 (+)
LOC113527641 NA coding downstream 223219 22201501 ~ 22204029 (+)
LOC117598678 NA coding downstream 262223 22240505 ~ 22242775 (+)
G200430 NA non-coding upstream 319493 21653231 ~ 21654736 (+)
G200420 NA non-coding upstream 330575 21639694 ~ 21643654 (+)
G200418 NA non-coding upstream 363772 21610254 ~ 21610457 (+)
G200325 NA non-coding upstream 588196 21384076 ~ 21386033 (+)
G199796 NA non-coding upstream 1378785 20595241 ~ 20595444 (+)
G200556 NA non-coding downstream 801 21979083 ~ 21979381 (+)
G200559 NA non-coding downstream 8080 21986362 ~ 21987001 (+)
G200560 NA non-coding downstream 9238 21987520 ~ 21987869 (+)
G200561 rnf157 non-coding downstream 9904 21988186 ~ 21988754 (+)
G200569 NA non-coding downstream 21404 21999686 ~ 21999892 (+)
si:ch211-216b21.2 LOC108273439,LOC107082319,LOC108429207,LOC107704231,LOC105932487,LOC108246656,LOC108274355,LOC102229454,LOC106946734 other upstream 473300 21457391 ~ 21500929 (+)
LOC113527713 fam196a other upstream 2407545 19526642 ~ 19566684 (+)
si:ch211-221j21.3 LOC108273429 other upstream 3161967 18806077 ~ 18812262 (+)
G198737 ppp2r2d,LOC107706599,LOC107653113,LOC107582184,LOC107553689 other upstream 3464070 18441886 ~ 18510159 (+)
pde6gb pde6g,LOC102781464,LOC103367935,LOC102221623 other upstream 3814143 18155145 ~ 18160086 (+)
G200571 NA other downstream 24542 22002824 ~ 22003274 (+)
srsf2a srsf2,LOC106612293,LOC107702465,LOC107566380 other downstream 30229 22008511 ~ 22012304 (+)
LOC113527202 NA other downstream 35524 22013806 ~ 22026481 (+)
mrpl27 mrpl27,LOC107665862,LOC108430158 other downstream 819860 22798142 ~ 22871284 (+)
G201154 NA other downstream 1227384 23205666 ~ 23206379 (+)

Expression


Co-expression Network