G200559


Basic Information

Item Value
gene id G200559
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 21986362 ~ 21987001 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU237310
GTCGACTCGCTTTTCTTGCTTGAAAGATGTGCTGATGCGGTGCTCTTGCCTTCTAGGTCAAGgatattttgagttcattaatatgaaataaactcTATCATTGCATGTTCTACTTAGATAacatttttggccaaaagagaaaaaaggccaAAAATTTAACACATTGGTGGcctaatgataattagaaacaagtagtgtttgtttgctttgcatTCAAACAGTACTGGGAGTGTGGATCCATTAGACGGTTTCTGTGTGGAACATGTAGACAAGCATTTTGTAAAAGGAATGAAAAGTCCTATATCGACCATGTACTGTTTTAAGTATATGCTgcttgctgtatttttattctcCCCTCCACTGGGACTAGGTATTATTCCTCTTCAGAGTTGGCAGGTCTGCATGCAGATGCTGTCTTCTGATAAATGATGTCAGCGAGCCTGATTTTGCAGTCTCACCTCACCCTCCTGCTGGGAGGCTGGCCGGCTCTCGGGTGTGTTCTGGTGGCGTTCGTCCCCCTCGGCTCCCGGCAGGTAGGAGCCGGACATGGAGGAGAGCGTGTCGGTGCTGATGCGAGAGTTCTGACTCTGTGAAGACGCCATGGACATGACAGACTGAgccaaactgctgctcactgggt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU237310 True 640 lncRNA 0.46 1 21986362 21987001

Neighbor

gene id symbol gene type direction distance location
nat9 nat9 coding upstream 19615 21961118 ~ 21966747 (+)
itgb3b itgb3,itgb3b,LOC108430317,LOC107698806,LOC107700113 coding upstream 27144 21936415 ~ 21959218 (+)
kcnj2a kcnj2,LOC108274206,LOC108429808,LOC107597836,LOC107704237 coding upstream 196135 21783029 ~ 21790227 (+)
kcnj16 LOC108274207 coding upstream 208531 21753341 ~ 21777831 (+)
unc13d unc13d,LOC107753247,LOC107597824,LOC107755420,LOC107704240,LOC107561838 coding upstream 346778 21612958 ~ 21639584 (+)
LOC113527221 NA coding downstream 42088 22029089 ~ 22035625 (+)
si:ch211-119c20.2 LOC108274060 coding downstream 50971 22037972 ~ 22089270 (+)
LOC113527624 NA coding downstream 137335 22124336 ~ 22126646 (+)
LOC113527641 NA coding downstream 214500 22201501 ~ 22204029 (+)
LOC117598678 NA coding downstream 253504 22240505 ~ 22242775 (+)
G200556 NA non-coding upstream 6981 21979083 ~ 21979381 (+)
G200555 NA non-coding upstream 8080 21974229 ~ 21978282 (+)
G200430 NA non-coding upstream 331626 21653231 ~ 21654736 (+)
G200420 NA non-coding upstream 342708 21639694 ~ 21643654 (+)
G200418 NA non-coding upstream 375905 21610254 ~ 21610457 (+)
G200560 NA non-coding downstream 519 21987520 ~ 21987869 (+)
G200561 rnf157 non-coding downstream 1185 21988186 ~ 21988754 (+)
G200569 NA non-coding downstream 12685 21999686 ~ 21999892 (+)
G200779 NA non-coding downstream 127405 22114406 ~ 22114822 (+)
G200784 NA non-coding downstream 137232 22124233 ~ 22242312 (+)
si:ch211-216b21.2 LOC108273439,LOC107082319,LOC108429207,LOC107704231,LOC105932487,LOC108246656,LOC108274355,LOC102229454,LOC106946734 other upstream 485433 21457391 ~ 21500929 (+)
LOC113527713 fam196a other upstream 2419678 19526642 ~ 19566684 (+)
si:ch211-221j21.3 LOC108273429 other upstream 3174100 18806077 ~ 18812262 (+)
G198737 ppp2r2d,LOC107706599,LOC107653113,LOC107582184,LOC107553689 other upstream 3476203 18441886 ~ 18510159 (+)
pde6gb pde6g,LOC102781464,LOC103367935,LOC102221623 other upstream 3826276 18155145 ~ 18160086 (+)
G200571 NA other downstream 15823 22002824 ~ 22003274 (+)
srsf2a srsf2,LOC106612293,LOC107702465,LOC107566380 other downstream 21510 22008511 ~ 22012304 (+)
LOC113527202 NA other downstream 26805 22013806 ~ 22026481 (+)
mrpl27 mrpl27,LOC107665862,LOC108430158 other downstream 811141 22798142 ~ 22871284 (+)
G201154 NA other downstream 1218665 23205666 ~ 23206379 (+)

Expression


Co-expression Network