G200561 (rnf157)


Basic Information

Item Value
gene id G200561
gene name rnf157
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 21988186 ~ 21988754 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU237312
GCACagcagaaagacaaacagagagcaGACATCAGACAAACAtctggacagacagacagatagacagatagacatacaaatagaaaaaacagacagtaaacagacagacaaaaagacagcatgatagatagatagatagatagatagatggtcAGTGTGTCACTCACTTGGAGCTGCTCTTCTTGACCTTGAGGCCTTGGCTGGAGGTGATGGAGTGCTCTAAGTGAGAAAGCgagtgtgtggctgtgtgaTGACTCGCAGTGCCGTACGCAGGCAGAGGTCCAGAGACGTGAGCTTTTGTCAGGCCGTGCAGTGCAGGAGCGCATGGTGAGGGGTTCAGCGGGCCGTTTAGAGCCTCTAAAAGAGACACGGCCTCGAATCCCTGGGGAATGTGTTCAGCCGCCTGAAACAGAGGAACATCAGCAGCAGCTGTGATATACACAACACCCACCACAGGTACTACATGTACTCTTTACTGTAATGGATATCCCATTGACCACGACATCATTTCAGATATATATTTAGGTTTATTTACAGGTTTAacatgtgtttttaaatatattatcttC

Function

symbol description
rnf157 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in endosome to lysosome transport; negative regulation of signal transduction; and protein ubiquitination. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in early endosome; nucleus; and plasma membrane. Orthologous to human RNF157 (ring finger protein 157).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU237312 True 569 lncRNA 0.46 1 21988186 21988754

Neighbor

gene id symbol gene type direction distance location
nat9 nat9 coding upstream 21439 21961118 ~ 21966747 (+)
itgb3b itgb3,itgb3b,LOC108430317,LOC107698806,LOC107700113 coding upstream 28968 21936415 ~ 21959218 (+)
kcnj2a kcnj2,LOC108274206,LOC108429808,LOC107597836,LOC107704237 coding upstream 197959 21783029 ~ 21790227 (+)
kcnj16 LOC108274207 coding upstream 210355 21753341 ~ 21777831 (+)
unc13d unc13d,LOC107753247,LOC107597824,LOC107755420,LOC107704240,LOC107561838 coding upstream 348602 21612958 ~ 21639584 (+)
LOC113527221 NA coding downstream 40335 22029089 ~ 22035625 (+)
si:ch211-119c20.2 LOC108274060 coding downstream 49218 22037972 ~ 22089270 (+)
LOC113527624 NA coding downstream 135582 22124336 ~ 22126646 (+)
LOC113527641 NA coding downstream 212747 22201501 ~ 22204029 (+)
LOC117598678 NA coding downstream 251751 22240505 ~ 22242775 (+)
G200560 NA non-coding upstream 317 21987520 ~ 21987869 (+)
G200559 NA non-coding upstream 1185 21986362 ~ 21987001 (+)
G200556 NA non-coding upstream 8805 21979083 ~ 21979381 (+)
G200555 NA non-coding upstream 9904 21974229 ~ 21978282 (+)
G200430 NA non-coding upstream 333450 21653231 ~ 21654736 (+)
G200569 NA non-coding downstream 10932 21999686 ~ 21999892 (+)
G200779 NA non-coding downstream 125652 22114406 ~ 22114822 (+)
G200784 NA non-coding downstream 135479 22124233 ~ 22242312 (+)
G200807 NA non-coding downstream 359136 22347890 ~ 22348118 (+)
G201019 NA non-coding downstream 878154 22866908 ~ 22868838 (+)
si:ch211-216b21.2 LOC108273439,LOC107082319,LOC108429207,LOC107704231,LOC105932487,LOC108246656,LOC108274355,LOC102229454,LOC106946734 other upstream 487257 21457391 ~ 21500929 (+)
LOC113527713 fam196a other upstream 2421502 19526642 ~ 19566684 (+)
si:ch211-221j21.3 LOC108273429 other upstream 3175924 18806077 ~ 18812262 (+)
G198737 ppp2r2d,LOC107706599,LOC107653113,LOC107582184,LOC107553689 other upstream 3478027 18441886 ~ 18510159 (+)
pde6gb pde6g,LOC102781464,LOC103367935,LOC102221623 other upstream 3828100 18155145 ~ 18160086 (+)
G200571 NA other downstream 14070 22002824 ~ 22003274 (+)
srsf2a srsf2,LOC106612293,LOC107702465,LOC107566380 other downstream 19757 22008511 ~ 22012304 (+)
LOC113527202 NA other downstream 25052 22013806 ~ 22026481 (+)
mrpl27 mrpl27,LOC107665862,LOC108430158 other downstream 809388 22798142 ~ 22871284 (+)
G201154 NA other downstream 1216912 23205666 ~ 23206379 (+)

Expression


Co-expression Network