LOC113527202


Basic Information

Item Value
gene id LOC113527202
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 22013806 ~ 22026481 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU237327
ACAAACGCCTCGTAGGATTTAGGATTTGATCCCGAGGCTGTAGTTTACATTTTCATTGTAGGTAACGGATTGAGCAAAAAGCATGAAAGTTTACTGCTTTCTGTTTACAGAGACAGACATATAAGCTTTCAGATCCTATATTTGCAATCTGTAGGCATCAACAAATCACCGATGCTTGgctaaaaagaagaagaagaagaagaagctcgACATAAGCCTAGCTAGCTCTCCAGCTGTAAAAGTTTATTGGTGAAATTAATGGACGCCTCCATGGACATGTGGGCCATCTGGCTTTCTGTCGTCTTCACGATCATCGCTGGTTTTCTCACAGCTGTgttatttggaaaaaataaatcgGTTTCGGTAAAGACAGACGCAAGCCCAGGAGAGGCGTTTCCACCCTGCAAAGAGCAAGAGGAGAGCACCGACAGCTCCAAGGAAGCACTTCACAGGACTCAGTGAACCCCAGACTGAATCTGAATGTACAGCGCAGACGACGGAAGACCTGCCAGACGAGCCACGTGCATCAAACCAGCAAGAGCTTGTCGGGGATCAGTGTGAGGAAGCCGAGTCAGAGAATGACGAGTCTTCACACTCTGCCTCAGtgAACAGGATGTGTGAGGATGATGATAAGGATCAGGCCCTAAGGTATATGCCTGGTGTGTTACGGACGAGCCAGCTTGAGAAGATGATGAGTAAAGAAGAGCTGGAGGAAGAACAGAGAGTTCAGCAGGAGCAGCTCGCTGCAATCTTCAAGCTGCTTAAAGAAAACCAGGACACATTTGGGGAGGTGACGGAGAAAGACATGGAGGAACAGCTTAAGCTTTACTCGATCTGAAATCACTGCACCAAGCACTGGTCTGCCGTCCTGGAAATGGAAAATTAACACTAAACCTCACTGTTGCTGCTGTTCagatgtggggggaaaaaaattagttCGAAAGTCCAGAACGGCTTGAAAATAATTCTGTCACGATGTGAGGAAAAACTGAGTAATTAATAAAGTTCAGTGTGTCTTATCCTTAAACTGCACACAATTCACAACCTGTTAGTAACATTGTGTAGTAAAGATTAGGTGTAGATGTAGTAATTATCTATgtagtaatgtagtaatgtagtaatatatctatgtgtgtgtatacagtaggTACATAtacattcaccatccactttattaggaacacatgtacacctgcacatttacgcagttatccaatcagccaatcatgtggcagcagcacaacgcaaaaaatcatgcaggtacaggtcaagagcttcaggtaatgttcatatcaaacatcagaatgggggaaagtgtgatctctgcgactttgatcgtggcatggatgttggtaccagatgggctggtttgagtatttcagaaactgctgatctcctgggaatttagTCTcaagaatttacacagaattgtgtgaaaaacagtaaaacattgagtgagtgacaatTTCCACTGTGggtgttaatgagagaggttatgggagaatggccagattggttcaagctgccaggaaggctaactcaaataatcactctttacaaccgtggtgagcagaaaagcatctcagcatgcacaaaacattgaaccttaaggtggatgggctacaacagcagaagaccatactgggttccacttctgtcaaggaagaacaggagtctgaggctatcatgggcacagattcactcaaactggacagttaaagattagaaaaaatcACGTGggatttttccagtcttcagctgaaaaaaatggctgtgattcctaaatggttaaggcaatgtttttgttaaacccc
>XM_034309366.1
ATGGACATGTGGGCCATCTGGCTTTCTGTCGTCTTCACGATCATCGCTGGTTTTCTCACAGCTGTgttatttggaaaaaataaatcgGTTTCGGTAAAGACAGACGCAAGCCCAGGAGAGGCGTTTCCACCCTGCAAAGAGCAAGAGGAGAGCACCGACAGCTCCAAGGTAGGGACATGTTACCCATGTCTCAGGAAGCACTTCACAGGACTCAGTGAACCCCAGACTGAATCTGAATGTACAGCGCAGACGACGGAAGACCTGCCAGACGAGCCACGTGCATCAAACCAGCAAGAGCTTGTCGGGGATCAGTGTGAGGAAGCCGAGTCAGAGAATGACGAGTCTTCACACTCTGCCTCAGtgAACAGGATGTGTGAGGATGATGATAAGGATCAGGCCCTAAGGTATATGCCTGGTGTGTTACGGACGAGCCAGCTTGAGAAGATGATGAGTAAAGAAGAGCTGGAGGAAGAACAGAGAGTTCAGCAGGAGCAGCTCGCTGCAATCTTCAAGCTGCTTAAAGAAAACCAGGACACATTTGGGGAGGTGACGGAGAAAGACATGGAGGAACAGCTTAAGCTTTACTCGATCTGAAATCACTGCACCAAGCACTGGTCTGCCGTCCTGGAAATGGAAAATTAACACTAAACCTCACTGTTGCTGCTGTTCagatgtggggggaaaaaaattagttCGAAAGTCCAGAACGGCTTGAAAATAATTCTGTCACGATGTGAGGAAAAACTGAGTAATTAATAAAGTTCAGTGTGTCTTATCCTTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU237327 True 1814 lncRNA 0.43 4 22013806 22026481
XM_034309366.1 False 783 mRNA 0.48 4 22014076 22025694

Neighbor

gene id symbol gene type direction distance location
nat9 nat9 coding upstream 47059 21961118 ~ 21966747 (+)
itgb3b itgb3,itgb3b,LOC108430317,LOC107698806,LOC107700113 coding upstream 54588 21936415 ~ 21959218 (+)
kcnj2a kcnj2,LOC108274206,LOC108429808,LOC107597836,LOC107704237 coding upstream 223579 21783029 ~ 21790227 (+)
kcnj16 LOC108274207 coding upstream 235975 21753341 ~ 21777831 (+)
unc13d unc13d,LOC107753247,LOC107597824,LOC107755420,LOC107704240,LOC107561838 coding upstream 374222 21612958 ~ 21639584 (+)
LOC113527221 NA coding downstream 2608 22029089 ~ 22035625 (+)
si:ch211-119c20.2 LOC108274060 coding downstream 11491 22037972 ~ 22089270 (+)
LOC113527624 NA coding downstream 97855 22124336 ~ 22126646 (+)
LOC113527641 NA coding downstream 175020 22201501 ~ 22204029 (+)
LOC117598678 NA coding downstream 214024 22240505 ~ 22242775 (+)
G200569 NA non-coding upstream 13914 21999686 ~ 21999892 (+)
G200561 rnf157 non-coding upstream 25052 21988186 ~ 21988754 (+)
G200560 NA non-coding upstream 25937 21987520 ~ 21987869 (+)
G200559 NA non-coding upstream 26805 21986362 ~ 21987001 (+)
G200556 NA non-coding upstream 34425 21979083 ~ 21979381 (+)
G200779 NA non-coding downstream 87925 22114406 ~ 22114822 (+)
G200784 NA non-coding downstream 97752 22124233 ~ 22242312 (+)
G200807 NA non-coding downstream 321409 22347890 ~ 22348118 (+)
G201019 NA non-coding downstream 840427 22866908 ~ 22868838 (+)
G201093 NA non-coding downstream 1076803 23103284 ~ 23103499 (+)
srsf2a srsf2,LOC106612293,LOC107702465,LOC107566380 other upstream 1502 22008511 ~ 22012304 (+)
G200571 NA other upstream 10532 22002824 ~ 22003274 (+)
si:ch211-216b21.2 LOC108273439,LOC107082319,LOC108429207,LOC107704231,LOC105932487,LOC108246656,LOC108274355,LOC102229454,LOC106946734 other upstream 512877 21457391 ~ 21500929 (+)
LOC113527713 fam196a other upstream 2447122 19526642 ~ 19566684 (+)
si:ch211-221j21.3 LOC108273429 other upstream 3201544 18806077 ~ 18812262 (+)
mrpl27 mrpl27,LOC107665862,LOC108430158 other downstream 771661 22798142 ~ 22871284 (+)
G201154 NA other downstream 1179185 23205666 ~ 23206379 (+)
polr2a polr2a,LOC107733452,LOC107584383 other downstream 1246093 23272574 ~ 23398663 (+)
LOC117595720 LOC107714409 other downstream 1284779 23311260 ~ 23318154 (+)
G201214 NA other downstream 1297592 23324073 ~ 23329571 (+)

Expression


Co-expression Network