G200779


Basic Information

Item Value
gene id G200779
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 22114406 ~ 22114822 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU237575
gagagagaggtataaaTGAAGAGTTTGGTTCCAAAAGGCGATAAacgccatttttaaaaaaattgagttCCCGCCAAAATCAGTATTGTATCTGGTCGGTattgaaaagtcaatttttgATTTTGTGCAAAATGCGATATCCGCCGTGttattctgtcatgttttctccCTATCTTTCCAAACCGCGACAAACGCCAGTCCCCCTTCTCTCTGCAGAATGCGATACATCCGctcaaccaatcacagcgcaCCATTCCAAGCATTGTAAACAGTAATGGCGGCGCTTTGAATACACCCGGCATCCTAGTTTTCCTCATCTACtttgtacaaacaaaaaaatgaataattttgacGGCATTGATGAACCTGATTCtgatacattttctttgcac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU237575 True 392 lncRNA 0.41 2 22114406 22114822

Neighbor

gene id symbol gene type direction distance location
si:ch211-119c20.2 LOC108274060 coding upstream 25136 22037972 ~ 22089270 (+)
LOC113527221 NA coding upstream 78781 22029089 ~ 22035625 (+)
nat9 nat9 coding upstream 147659 21961118 ~ 21966747 (+)
itgb3b itgb3,itgb3b,LOC108430317,LOC107698806,LOC107700113 coding upstream 155188 21936415 ~ 21959218 (+)
kcnj2a kcnj2,LOC108274206,LOC108429808,LOC107597836,LOC107704237 coding upstream 324179 21783029 ~ 21790227 (+)
LOC113527624 NA coding downstream 9514 22124336 ~ 22126646 (+)
LOC113527641 NA coding downstream 86679 22201501 ~ 22204029 (+)
LOC117598678 NA coding downstream 125683 22240505 ~ 22242775 (+)
ca10a ca10,ca10a,LOC107584395,LOC103361575 coding downstream 393596 22508418 ~ 22701836 (+)
pkd1b LOC108273530,LOC108429150 coding downstream 692357 22807179 ~ 22847566 (+)
G200569 NA non-coding upstream 114514 21999686 ~ 21999892 (+)
G200561 rnf157 non-coding upstream 125652 21988186 ~ 21988754 (+)
G200560 NA non-coding upstream 126537 21987520 ~ 21987869 (+)
G200559 NA non-coding upstream 127405 21986362 ~ 21987001 (+)
G200556 NA non-coding upstream 135025 21979083 ~ 21979381 (+)
G200784 NA non-coding downstream 9411 22124233 ~ 22242312 (+)
G200807 NA non-coding downstream 233068 22347890 ~ 22348118 (+)
G201019 NA non-coding downstream 752086 22866908 ~ 22868838 (+)
G201093 NA non-coding downstream 988462 23103284 ~ 23103499 (+)
G201077 NA non-coding downstream 989854 23104676 ~ 23105908 (+)
LOC113527202 NA other upstream 87925 22013806 ~ 22026481 (+)
srsf2a srsf2,LOC106612293,LOC107702465,LOC107566380 other upstream 102102 22008511 ~ 22012304 (+)
G200571 NA other upstream 111132 22002824 ~ 22003274 (+)
si:ch211-216b21.2 LOC108273439,LOC107082319,LOC108429207,LOC107704231,LOC105932487,LOC108246656,LOC108274355,LOC102229454,LOC106946734 other upstream 613477 21457391 ~ 21500929 (+)
LOC113527713 fam196a other upstream 2547722 19526642 ~ 19566684 (+)
mrpl27 mrpl27,LOC107665862,LOC108430158 other downstream 683320 22798142 ~ 22871284 (+)
G201154 NA other downstream 1090844 23205666 ~ 23206379 (+)
polr2a polr2a,LOC107733452,LOC107584383 other downstream 1157752 23272574 ~ 23398663 (+)
LOC117595720 LOC107714409 other downstream 1196438 23311260 ~ 23318154 (+)
G201214 NA other downstream 1209251 23324073 ~ 23329571 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G330014 NA non-coding CI01000112 null 3195863 ~ 3245286 (-)