G200784


Basic Information

Item Value
gene id G200784
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 22124233 ~ 22242312 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU237582
TGACCTTGCACTTTGGGGAGAAAACAACTCCAATTATGGTGATGGAAGAAAAGGAAGTAGCTGTGTATAAATAGCACTGAGTTGAATCtctgacacatttttttgtttgacgAGTGCAGCTTAAGCCATATAGGGAAATAAACAATTATTACCTGTAGGTAAGCAGATTGAAGGAGCATCGGTGGTGATTGTTTGAGCACCTCCTTGTTCTGCATGGTAGCTTATAGGAAAAGGAAACTGGTGTCTTTTTCTTACTATTAAAGAAGCCTTGAAACCATCAGAGCTATTAACAATGAACACAGCTGTGAAGGTTTCCACCTTTGCCAAAAATGTTGCCACTGCAGTCATCATCATTTCAGTTGTTTGCTACGCAGAGaacCTGAAATGGATATCAGATTCTGTCATTAGACTGGACATGGCAGAAAATTCTGTTGATGACCAATTTATAGGCTGCAGAGACACAATGTACAAGCTGATTACAAAGAAGATTCTACCAGAAgagttaaaatgtaataaaaattttaaaaacatttgggAAAAGTACTCAAaatttactgattattttacaagaATAATAAAGGTCTACACAGACGGAGATTCTAAACTTTATAGTCAGTTCAATGAAGCTG

Function

GO: NA

KEGG:

id description
ko04664 Fc epsilon RI signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
TU237582 True 629 lncRNA 0.37 4 22124233 22242312

Neighbor

gene id symbol gene type direction distance location
si:ch211-119c20.2 LOC108274060 coding upstream 34963 22037972 ~ 22089270 (+)
LOC113527221 NA coding upstream 88608 22029089 ~ 22035625 (+)
nat9 nat9 coding upstream 157486 21961118 ~ 21966747 (+)
itgb3b itgb3,itgb3b,LOC108430317,LOC107698806,LOC107700113 coding upstream 165015 21936415 ~ 21959218 (+)
kcnj2a kcnj2,LOC108274206,LOC108429808,LOC107597836,LOC107704237 coding upstream 334006 21783029 ~ 21790227 (+)
ca10a ca10,ca10a,LOC107584395,LOC103361575 coding downstream 266106 22508418 ~ 22701836 (+)
pkd1b LOC108273530,LOC108429150 coding downstream 564867 22807179 ~ 22847566 (+)
LOC113527478 LOC108273458,LOC108273472,LOC108429252 coding downstream 606991 22849303 ~ 22853496 (+)
wnt3 wnt3,LOC108273758,LOC107584390,LOC107556586,LOC107723638,LOC107665892,LOC100707095 coding downstream 890171 23132483 ~ 23167487 (+)
hdlbpb hdlbpb,LOC108273755,LOC108430121,LOC107657280,LOC107584388,LOC107733459,LOC105907188 coding downstream 996985 23239297 ~ 23265400 (+)
G200779 NA non-coding upstream 9411 22114406 ~ 22114822 (+)
G200569 NA non-coding upstream 124341 21999686 ~ 21999892 (+)
G200561 rnf157 non-coding upstream 135479 21988186 ~ 21988754 (+)
G200560 NA non-coding upstream 136364 21987520 ~ 21987869 (+)
G200559 NA non-coding upstream 137232 21986362 ~ 21987001 (+)
G200807 NA non-coding downstream 105578 22347890 ~ 22348118 (+)
G201019 NA non-coding downstream 624596 22866908 ~ 22868838 (+)
G201093 NA non-coding downstream 860972 23103284 ~ 23103499 (+)
G201077 NA non-coding downstream 862364 23104676 ~ 23105908 (+)
G201186 NA non-coding downstream 1026315 23268627 ~ 23269419 (+)
LOC113527202 NA other upstream 97752 22013806 ~ 22026481 (+)
srsf2a srsf2,LOC106612293,LOC107702465,LOC107566380 other upstream 111929 22008511 ~ 22012304 (+)
G200571 NA other upstream 120959 22002824 ~ 22003274 (+)
si:ch211-216b21.2 LOC108273439,LOC107082319,LOC108429207,LOC107704231,LOC105932487,LOC108246656,LOC108274355,LOC102229454,LOC106946734 other upstream 623304 21457391 ~ 21500929 (+)
LOC113527713 fam196a other upstream 2557549 19526642 ~ 19566684 (+)
mrpl27 mrpl27,LOC107665862,LOC108430158 other downstream 555830 22798142 ~ 22871284 (+)
G201154 NA other downstream 963354 23205666 ~ 23206379 (+)
polr2a polr2a,LOC107733452,LOC107584383 other downstream 1030262 23272574 ~ 23398663 (+)
LOC117595720 LOC107714409 other downstream 1068948 23311260 ~ 23318154 (+)
G201214 NA other downstream 1081761 23324073 ~ 23329571 (+)

Expression


Co-expression Network