G201093


Basic Information

Item Value
gene id G201093
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 23103284 ~ 23103499 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU237911
CTGGAGTTTCTTGAACAACACATTTCTTGTATAAATTCTCCTGCAAGTAATTTTTAATGAGTTACAGCTTGAGAAATATCGTCACTCCCTCTGTGGTGCATTCTGGATTCAGTGGTCAACATATTCAGGGAAAAAGAGTGAAAAGTTTGGACCCAAGGGCTTTCTTCATTTGTACTTTTTGCACACCATGAACATGCAGTGACCAAGTAAAGTTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU237911 True 216 lncRNA 0.39 1 23103284 23103499

Neighbor

gene id symbol gene type direction distance location
LOC113527478 LOC108273458,LOC108273472,LOC108429252 coding upstream 249788 22849303 ~ 22853496 (+)
pkd1b LOC108273530,LOC108429150 coding upstream 255718 22807179 ~ 22847566 (+)
ca10a ca10,ca10a,LOC107584395,LOC103361575 coding upstream 401448 22508418 ~ 22701836 (+)
LOC117598678 NA coding upstream 860509 22240505 ~ 22242775 (+)
LOC113527641 NA coding upstream 899255 22201501 ~ 22204029 (+)
wnt3 wnt3,LOC108273758,LOC107584390,LOC107556586,LOC107723638,LOC107665892,LOC100707095 coding downstream 28984 23132483 ~ 23167487 (+)
hdlbpb hdlbpb,LOC108273755,LOC108430121,LOC107657280,LOC107584388,LOC107733459,LOC105907188 coding downstream 135798 23239297 ~ 23265400 (+)
LOC113527736 NA coding downstream 212094 23315593 ~ 23321228 (+)
capgb capg,capgb,LOC107556576,LOC107665882,LOC107657288,LOC107733451,LOC108430072 coding downstream 298684 23402183 ~ 23420064 (+)
si:dkey-219e21.2 LOC108273732 coding downstream 323376 23426875 ~ 23436725 (+)
G201019 NA non-coding upstream 234446 22866908 ~ 22868838 (+)
G200807 NA non-coding upstream 755166 22347890 ~ 22348118 (+)
G200784 NA non-coding upstream 860972 22124233 ~ 22242312 (+)
G200779 NA non-coding upstream 988462 22114406 ~ 22114822 (+)
G200569 NA non-coding upstream 1103392 21999686 ~ 21999892 (+)
G201077 NA non-coding downstream 1177 23104676 ~ 23105908 (+)
G201186 NA non-coding downstream 165128 23268627 ~ 23269419 (+)
G201234 NA non-coding downstream 271575 23375074 ~ 23380990 (+)
G201240 NA non-coding downstream 356503 23460002 ~ 23460455 (+)
G201281 NA non-coding downstream 597220 23700719 ~ 23729010 (+)
mrpl27 mrpl27,LOC107665862,LOC108430158 other upstream 232000 22798142 ~ 22871284 (+)
LOC113527202 NA other upstream 1076803 22013806 ~ 22026481 (+)
srsf2a srsf2,LOC106612293,LOC107702465,LOC107566380 other upstream 1090980 22008511 ~ 22012304 (+)
G200571 NA other upstream 1100010 22002824 ~ 22003274 (+)
si:ch211-216b21.2 LOC108273439,LOC107082319,LOC108429207,LOC107704231,LOC105932487,LOC108246656,LOC108274355,LOC102229454,LOC106946734 other upstream 1602355 21457391 ~ 21500929 (+)
G201154 NA other downstream 102167 23205666 ~ 23206379 (+)
polr2a polr2a,LOC107733452,LOC107584383 other downstream 169075 23272574 ~ 23398663 (+)
LOC117595720 LOC107714409 other downstream 207761 23311260 ~ 23318154 (+)
G201214 NA other downstream 220574 23324073 ~ 23329571 (+)
afap1 afap1,LOC107733469,LOC107657296,LOC107584377 other downstream 501338 23604837 ~ 23688417 (+)

Expression


Co-expression Network