G201214


Basic Information

Item Value
gene id G201214
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 23324073 ~ 23329571 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU238054
ataaaatcatatttttaatcccattcaaatgaaattaaaatacttTGTGTGAGcaggtaatataatataaataatcatacTAGCATGCAGtgctttttatttgttaaaatggtTCTGTGCACACTAtttccactagatggcactaGATTACACAAATTCTTGCTTGCATTATTAATTacaatctgtttatttctttttcccctATTCCCTTTTAGATTAAGCATCCTAAAGAGAaatcaactgttttttttaacaaaataaaaaaagagtaaagGACTAAAAAGGACTGGGACTGGATTCTAAAAAGATTCAATACTTTTTGACTCGATTCCAGGCATTTGAGATTCGAGAGTCGACTGTAATGCTTTGGGCTCAATTCCACACAGTGACGTTATTCGGAAATATTGCTAGTCTGGAGGAAGAAACCACTCCTACCACCAAACATCTCAACCAGATGTCAATGATCGATCAGTTTATGCTCAAAACAGCTTGATAAAGATGTATATATGGATGTCTGatttaaaaacagtgaaaatacgTGGAAGAAATATTTGAtaaaccattacagttagtaGTTCAGTTTAAAACACGTAACAGCAGTTTGATGCTCCTGATCTTGACTCAGTCTCGATTTCATTTGGATTCGACCCCCTTAAGACTCTGTCTTAACTCGATCTCAggtagtcctggtcttggacttgccTTGGACTCGACAGTGGTGTTCTTGACGACAGCCCTACTTATTATTGTTCATCTATTGTTTTCAAAGATGCTAagattaatgatttttaaaattatttttaggtACAAAATCTAACAATATCATAATATAGATCTTGTGATACTATTGGCCAAATTTCATATACGTAGATCTTAAACTTGTAACACAAAAACCTTTATACAAGCTGCGTTAAAGTggaatatttaattatattttgttagAAAACTGTCATTAATTATCTTTTGACCTTCCATGAActgatgtagcttacagcaggttatggtcactgaactgctggatgtccaggtggtgctccaaaaacaatgtgggccttatagataattggagcaGTTTTGaaggcaaggctggcctgttagggcgggacggtatCCATTCCACTCGGGACGGTAtcgctctcatttcttgcagcgtaccacatagtctcagaacaggcctagttaattagtgtcaatccagggccaaggccagggagcagacaagcaggctaaactgaccgtctgctagctgcactgagtcatcacccaggttccaccatattgagactgtgtctgttcccaaaaatgtaaacaaaaatgtagaaatactgtaGAAAGTTATAATATAGAACGTttttttagtaacctaattaacataaaattagttCATACTGactgcacagccagcacctttgatctgaagttaggactgttaaatattagatcacTTACATCTAAAGctcttattgttaatgaaactattactggtcaggagtttaatgtactgtgtttaacagaaacatggattaaaccaaatgagtatgtggcattaaatgaagctagtcctcccggacACGGTCttgtctaactggcagaggaggaggtgtcgcagttatttataatgacaGTCTAGGCGTCACATAAAAACCTGGACATAAATTCAACACGTTTGAAGCTCCTTataataacataacatatgtagccacaaaaaataagtctaccctgTCAgttctgctaattattatttacagacccccagggccatattctgaattcctctgtgaatttgcagatttcatctcaaagacaaagcattaattgttggagactccTTTTGATAATCCGCAAGACCCTCTGATAACAGTGGTTGTGTccacgctACCACGTCAAAAGTACATTCACgtcagctactgcacagagttttatcaataatctcccagaggTATCAACTATGACTAGGCTCACCTTCTGATCCCAAAGACCTTGATCAGGCAgttgaatgcttagagtcaacgTTCCGCTACACGcaagataaggtagctccacttaaaagaaaaataattagagagaaaaagctagcaccctggtataatgatcaaacacacaccttaaaacagaccactcaaaaattaggatgtaaatggcatcaaactaaattggtagtatttcaaatagcatggaaggagagcctccaGAGCTATAGAAAATCTCAttgtgctgctagatcaatgtatctctctaccctaattgaagataatagaaataatcctagattcttatttaatactgtagcaaaattaactaggaataagaccaccacagaaacATGCATATCATCAATATGCAgtagcgatgacttcatgaatttttcaatgacaaaattgaaaatatcaggcaaaaaattcagactataaatttaGAACTagacaatttgataactaaccctgtagataacaATATAACTATAGCTGATCAGAGATTAGAATGTTTTGCTCCCCTTCTAGAGATAAAACTAATTTCaataatttcctcatcaaaatcatgaacttgtgtactagatccctaacctacatgtttcttcaaacagatacttccagaagcaatcaaacctcttctaaaaataatcaatccTTCCTGTAGCACTgactatgtacctaaatcctttaaactagcagttatcaaattCCTGagtaaaaaaacctgacctcaaccccggtcagctgtctaactatagaccaatatcaaacctcccctttatctccaagatcctagaaaaggttgtagcacagcagctacgCTCATAACTACGTAgcaataacattcatgaaatgtatcagtcaggatttaggcctcatcatagcacagagacagcactggttaaagtggtaaatgacctactactggcctctgatcagggttgtgtctccttgcttgtgctgcttgatcttagtgcagcttttgataccattgatcatgctattctcctcgatagactagaaaatgttgtaggcattaAAGGAaaggccctctcctggctcaggtcttatctcactgatcgttatcagtttgtagacgtaaatggtgacttctctatgcatattaaggtaaagtttggtgttctgcaaggttctATTTTAGGCCCCTCTGCTCttctctttatatatgctacctctgggcaaaattattcacaaGCATGGTATTGGCTTctactgttatgctgatgacaaacagttgtatgtttcagcaaagccagatgagagacaccagcttacaagttgaggaatgtgtaaaagacattagaaactggatgcttattaatttccttctacttaattctgtcaagacagaagtacttgtactaggaccacatgcagctagaagtaagctttctgattacacaataactctggatggccatTCCGTTTCATcgtgtgcagcagtaaaagaccttggtgtgattattgcctacagtctttcatttgaagctcatgtagataatattattaggacagccttctttcatctcagaaatattgctaagttaaaaaatatgatgcagaaaaactagttcatgcttttgttacctctaggttggattattgtaatgccttgctgtctgctgtctggatgttccagtagatgcttaaacaagctccagttagtccagaatgcatcagcgagagtccttactagaaccagaagatatgaccacatcacccctatcttatccacactgcactggctcccaatcaaatttcacattgattataaaatactactatttaCCTATAAAGCAAACGTCttgtcttttatgatctgccatgcctacttcgataaaaggtgcaggctatttgttggtacctcgaatggTGAAGGCTACAGAGGGGGGCAGAACTTTCTCTTTCAAAGCCCCACGGTCTTGGAaaagccttccaattagtgttcgggactcagacacagtctcagtgtttaagctaagtctaggctgaaaacaaatatatacttAAGTAAAGGAGCTGATCTAGAGGGTTCATAGGTatagagtgttttggtgaactgggatgtttggatgctgtcgcccccccactctcacgcattcactcaggtttgttgatggttgagtggctggccactttatgtcccagggtctcctcatgtctgtgttaccttctggctctcccttttagttatactgtcatagctagtcttgccagagtccctgcttgcactctgcacacaatgtatattatccttaaccattacatgacaataagcatacctaataatctgtgtttctctttttgcaCTCCATCATTGTCTCCATCaatgaacagttgataacttcaacaaaatagacttcatgtgaaaactataacgAAGTTCCTGgctacacaattgcactttttgacacatagtacacagttatagaagggaattatttataatcgcactatcgggtgtcacccagatgaggatgggttccctttggagtctggttcctctcaaagtttcttcctcatatcatctcagggagtttttcctcaccaccatcacctctggcttgctcattaggaataaataaaaaattttatatcctgagtttatgtatctctgtaaagctgctttgtgacaatgtccatttttaaaagcgctatacaaataaaactgaactgaattgaattgaatacaaTATGAACACAAAGGAAAGAAAGCACAAAACAACAAGGCAGGTGAACTTCCTGGGATTTGTCGAGAGTTTCTCAGAATGTTTTCCTTTATCAGGATAAATATATCAAGTGATATTATAACATGACTATTACTGTTAGTTATTGTTAGTTATAAGTGTAATTTCTTCATTGCCAGATGAAATGTATCTAATACAAATAATCTGAAGAACTGAATTGTGAACtgagctgtaaatcacaggtcCAGGGATGGCAAATGTGGGACAACATGACACTCCGGTGGCGCCATCTACTGTAATTATGCAATACTGAAAGGATTTGGTCAAACTGTAAGGAGGATTTAAATGAGCTTGTTTGTTTGGTGGAAGCTGGTTGGTGGAATTGTGACCACACCCCtttctgtgatttaaaaaaaaaaacctaacagCTATATACTAACTCTCTGTGAGTTCATTCACTGCTTTTGTGGGACAGCTGTGTGATGAGATAGACGTGTGCTTGAAGAAAGCCCGGTCGAGATCGATGTCTTGTCCCTGAATGAGAATCTTTTCCAAACAGCCCTggaggtggtgtgtgtttgtcgaGTCCTCA

Function

GO: NA

KEGG:

id description
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU238054 True 5273 TUCP 0.38 2 23324073 23329571

Neighbor

gene id symbol gene type direction distance location
LOC113527736 NA coding upstream 2845 23315593 ~ 23321228 (+)
hdlbpb hdlbpb,LOC108273755,LOC108430121,LOC107657280,LOC107584388,LOC107733459,LOC105907188 coding upstream 58673 23239297 ~ 23265400 (+)
wnt3 wnt3,LOC108273758,LOC107584390,LOC107556586,LOC107723638,LOC107665892,LOC100707095 coding upstream 156586 23132483 ~ 23167487 (+)
LOC113527478 LOC108273458,LOC108273472,LOC108429252 coding upstream 470577 22849303 ~ 22853496 (+)
pkd1b LOC108273530,LOC108429150 coding upstream 476507 22807179 ~ 22847566 (+)
capgb capg,capgb,LOC107556576,LOC107665882,LOC107657288,LOC107733451,LOC108430072 coding downstream 72612 23402183 ~ 23420064 (+)
si:dkey-219e21.2 LOC108273732 coding downstream 97304 23426875 ~ 23436725 (+)
mfsd8 mfsd8 coding downstream 117572 23447143 ~ 23459505 (+)
si:dkey-219e21.4 LOC108273735 coding downstream 136786 23466357 ~ 23472229 (+)
ablim2 ablim2 coding downstream 211453 23541024 ~ 23600132 (+)
G201186 NA non-coding upstream 54654 23268627 ~ 23269419 (+)
G201077 NA non-coding upstream 218165 23104676 ~ 23105908 (+)
G201093 NA non-coding upstream 220574 23103284 ~ 23103499 (+)
G201019 NA non-coding upstream 455235 22866908 ~ 22868838 (+)
G200807 NA non-coding upstream 975955 22347890 ~ 22348118 (+)
G201234 NA non-coding downstream 45503 23375074 ~ 23380990 (+)
G201240 NA non-coding downstream 130431 23460002 ~ 23460455 (+)
G201281 NA non-coding downstream 371148 23700719 ~ 23729010 (+)
G201284 NA non-coding downstream 389476 23719047 ~ 23722939 (+)
G201297 NA non-coding downstream 408786 23738357 ~ 23740340 (+)
LOC117595720 LOC107714409 other upstream 5919 23311260 ~ 23318154 (+)
G201154 NA other upstream 117694 23205666 ~ 23206379 (+)
mrpl27 mrpl27,LOC107665862,LOC108430158 other upstream 452789 22798142 ~ 22871284 (+)
LOC113527202 NA other upstream 1297592 22013806 ~ 22026481 (+)
srsf2a srsf2,LOC106612293,LOC107702465,LOC107566380 other upstream 1311769 22008511 ~ 22012304 (+)
afap1 afap1,LOC107733469,LOC107657296,LOC107584377 other downstream 275266 23604837 ~ 23688417 (+)
G201962 NA other downstream 1052216 24381787 ~ 24382287 (+)
LOC113527444 chst15 other downstream 1126088 24455659 ~ 24506076 (+)
LOC113527710 hmx3 other downstream 1331473 24661044 ~ 24666608 (+)
dupd1 comtd1,cmtd1,LOC108273857 other downstream 1999638 25329209 ~ 25428112 (+)

Expression


Co-expression Network