G201284


Basic Information

Item Value
gene id G201284
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 23719047 ~ 23722939 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU238144
CCTGGGGGGAAAAGCAATAGAAAATCAGAGAATAAATGAGATATTATGCATTTGGTCATAGGATAAACATCCAGTCTCTgaagaaacaaaagaataaaatatataacttaACGATTTAAGAAAAATTAGGCTATCATCGCCagttcattgttgttgttttttttttgttttttttgttttttttacagtccaTAATAATTTAAAGATGTTCTGAAGTATGAACCCAACAATTGCCTTTCGTCCGTCATCATCTTTTGAAAGCAAATATTATCCAGGGGAATAATTAATCTGAACCCAAAACAAATTACAGTACAAAAACTGGCAAGTAAAAGGTTCAGGTTTAAAAATTATCCATTCTGGATGATGGATGTCTTTGCTTGCAACATCTTCCTTTCACCTTGGTCCATAAAGTTCATTGTAGATTCAAAGCATCGCAGAATTCCCTCCTGAATAAAAAGGGAGGATGTAGGCTTTCAAATAGTCTTCTGACTCAGAGGTGAGACACTCTTACCAGCAGCATCAGTGAATGGACTGGaatgtttaattttacagaaaaaaaggcaTGCATGTGTTCGACTGGATTGTGAGTTTATGAACAGCAGTGTCTGTAGAGTTCCAGGCTGAGAAACGACAGTTTGAACAAACTTGATCACCGGATGTGAGACGAAGTGCATGCAGCTTTTCAAAATAAATCTCTTTGGCCTTTCACACCATGAGACTGGTGAGGTCTGTCAAACATAAGGCCAGAaggcatgaagaaaaaaagaattacatGCAACAGTACCATAGGATATACATGTACACCTTTCcgatatacatactgtacaacCTTCATCTTATACTGCTGTCTTTCATAAAGTGGCCCTGCATCTGTAATGTTTGCATACTTTGCATAAATATGTAAGGAGATTATTCCCATTCAAGGCAGTACTACATGATTTTAGTAAACAACTTCTTTGCTATAACCGATAAatcacagcacaaacacacacaaaaggttTATACTTTCATTCAGTCGGAAACTGAAATAACACTGAAGTGGTGCTTCTTTTCAGAAAACATAGATGTCTGTTTCTTACATCTTGTAAACATCAATTTGAGCCTTAATTCTCACCAGCTGCAGGTTTTGTATAATGTGGGCCAAGATTTCTGCTTCGAAGCAGGAACATGTGAGAAcacaacacatttattacaatataatactgataataaGGTAAACGTCCCTTGAGGTCATGACCCTCACTGTTTGATAAAAAGAAACATCGCCAAACATTGAAGCTCTGGAAGTTTCAGAGACTTTGTTTTCTGCACTGTGGCAACTTTTTATGTATGGAAATGGACTTGGGACTTGACTTTATCTGTCTTTACATGGGAAGTGGCTTGGAGCTAGTCTGTCTTGACTTGAGACTTGACTTGAGACTTGACTTGAGACTTGTATGTATTGACTTGGAACTTGACTTGAGAATCGGCTGTCTTTATTCTGGACTTTACGTGCAACTTGTACTTCAGACTTGTCTGAATTTACTTGGGACTTGGCTTGAGACTTGTCTTTCTTTATTCTGCACTTGAACTTGAGGCTTGTCATGTCTTTACTCGGGACTTGAACTTGAGACTTGTCTGTCTTTGCTTGGGACCTGACTTGGGGCGTGACTTAAGCGCTTACTTGGAATTTGAGATTTGTCTGTCTTGACTTGAGACTTGTCCATCTTTACTTGGGATGTGACATGAGACTTAGCTGTCTTACTTGGGACTTGACTCTGTAACTTGACTCTGTCTGTACTCGGGACGCGCTTATCTGTCTTTAATTAGGATATGACTTCCTTCTTTACTCAGGACTTGACTTCAGACTTGTCCATCTTTACTTGAGACTTGACTTGAGACTTGTTCCTCTTTACTTGGGACTTGACTTGAGACTTGTCGGCCTTTACTCGACTTGGTGCTTGTACATCTTTACTCTGGATTTGACTTGAGACTTGTCAAAACTTGCTTGCCTGTCTTTAATTAGGAAATGACTTGAGACTTCCATCTTTACTTAGGACTTGATTTGGGAATTGTCCATCTTTCCTTGTGACTTGACTCTGGAATTGTCTGTCTTTACTCAGGAGACTGTCTTTACTATTACTGTCTTTAATTGGGATATGACTTCCATCTGTACTCAGGACTTGACTTGAGACTTGCACTTCAGACATGTCAGTCTTTACTTGGGACTTGACGCTTGTCTTCCTTTACTTGGTACTTGACTTTGGAATTGTATGTCTTTACTGGGGAGGTGACTTCTTGTTTGTCTGTATTTAATTAGGATATGACTTGTGATTTCCATCTTCATTCAGGACTTGACTTGAGACTTATCTATCTTTACTCTGAATTTGACGTCAGACATGAACGTCTTTACTCTGGGCTTGTGAATTGTCTGTCTTTAATTGGTACATGACTTCAGACCCATAGTTCAAATTCGTCGGTCTTGACCCAGGACTTGAGTATCTAGAGTTGAGACTCACTTACTTGAAAAATCATGTGTTGTTCCCACCTTGCTCATTTAGACTACTGATTTTAAGATTTAACACAAAGTCGTTTTCGTCTTTGTCAGCTAGCTGCTAGAATGGGAGGACAAAGTGTCAGTAAGAGTAATAAAATTTGGCATGGTTGGCACATGTgaatgatgctgtgtgtgtctgcaggaaATCAGGCTCACATTGCATTAAAGCACCACTACATTAAACAGTTGATGCTGACAGAACTTTCCCTGGTGTTTGGCAGATGATGGATCAATTATCTGTTAAAGAGACAAACCAGTATTATAATTGCAGCCACATGTTATAATTACAGCCttatgtttgagtgtgtgtgcgcgcgtgcatGGACATGTGTCTTACTGAGtcatatcacagcaatttaacaCCATGTGTTTTGTACATTGGTTCTTCACGGTAAGCAGACAAGTCTAAGGCGGTTTGTCTTTTCTTAGAGGCACTTAAGGTGCTTTTGATCTGCATCCTGGAGTGTCTGAGAGCCTGGTTGGCTCTTAAATAGGAATTGCATATAAATCCAAATGTGACCTGGATGCAGAATGGCACAGTGTTGTTTAGCATTAGTTAGCAAGCATTGACTGTACTGAATGAGTGATTTGTATTGCATAAGCAAAACTACATGCTCAGTTATTGCTAGTTATGTTGCTACCTATTGGAACAGTACTTTACATGCCAAAGTAGGTTACTACGTTGTTAtttacacatattattattattaggcacTTATTATTAAATGCTTAGTCTAAATTTTAAAGCATATCTGGCTAACTAAACTGTTGTGCCCTactaaagcagaagaaaaatgtctaaCATTTACTTGATGTCCAGCCCGAAAGAGCAGTAGCTTGGTCATTTGATATAGAGTTACTTCATGGCAGTTATTTCCATTCTGTTgaataacacactctgaaaAGTAAAACACTAAATCTtgacaaaatatgaaaacacaAATACTGCTTTTGCTCTAGCAGGGCAGCGCTAGCTAGCCAAGTCCAGTCTCCCAGTTCACAGACCAAGCAATCCTGACATACAACCTACTAGTTTAGCAAACTTAACACTTAGGCCTTGATGCATGACTTTGTGTCCAGAAGTTCACATACTTGTCTGCGTATCTTATGTTCGTCAGAGTGATTAAAAGCAACAGCCATTAGATGCACTAGATCCAAGCTGAAGTGTAAAATGTTTCGTTATTTCATGCACGGCAATGTTAAACGCTGACGAGCTCTGAACTGCATCTCAATATTAAAACTCTGACCATACATACAAAAGTATTTTCTAATCTATAAAATCCAGAAGAATGGTATGCAAGACAGAACACTGGGCAGGTTTGAAGGCTATata

Function

GO:

id name namespace
GO:0005581 collagen trimer cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU238144 True 3869 lncRNA 0.38 2 23719047 23722939

Neighbor

gene id symbol gene type direction distance location
ablim2 ablim2 coding upstream 118915 23541024 ~ 23600132 (+)
si:dkey-219e21.4 LOC108273735 coding upstream 246818 23466357 ~ 23472229 (+)
mfsd8 mfsd8 coding upstream 259542 23447143 ~ 23459505 (+)
si:dkey-219e21.2 LOC108273732 coding upstream 282322 23426875 ~ 23436725 (+)
capgb capg,capgb,LOC107556576,LOC107665882,LOC107657288,LOC107733451,LOC108430072 coding upstream 298983 23402183 ~ 23420064 (+)
uros uros coding downstream 324624 24047563 ~ 24064984 (+)
mmp21 mmp21 coding downstream 344600 24067539 ~ 24080612 (+)
ctbp2l ctbp2,LOC105926449,LOC107387783,LOC106955101,LOC103481571 coding downstream 409967 24132906 ~ 24235084 (+)
hpdl hpdl coding downstream 544339 24267278 ~ 24273823 (+)
fam53b fam53b coding downstream 562142 24285081 ~ 24323614 (+)
G201240 NA non-coding upstream 258592 23460002 ~ 23460455 (+)
G201234 NA non-coding upstream 338057 23375074 ~ 23380990 (+)
G201186 NA non-coding upstream 449628 23268627 ~ 23269419 (+)
G201077 NA non-coding upstream 613139 23104676 ~ 23105908 (+)
G201093 NA non-coding upstream 615548 23103284 ~ 23103499 (+)
G201297 NA non-coding downstream 15418 23738357 ~ 23740340 (+)
G201600 NA non-coding downstream 40126 23763065 ~ 23763266 (+)
G201604 NA non-coding downstream 52442 23775381 ~ 23860976 (+)
G201753 LOC108274257 non-coding downstream 315999 24038938 ~ 24043243 (+)
G201793 NA non-coding downstream 433567 24156506 ~ 24156965 (+)
afap1 afap1,LOC107733469,LOC107657296,LOC107584377 other upstream 30630 23604837 ~ 23688417 (+)
polr2a polr2a,LOC107733452,LOC107584383 other upstream 320384 23272574 ~ 23398663 (+)
G201214 NA other upstream 389476 23324073 ~ 23329571 (+)
LOC117595720 LOC107714409 other upstream 400893 23311260 ~ 23318154 (+)
G201154 NA other upstream 512668 23205666 ~ 23206379 (+)
G201962 NA other downstream 658848 24381787 ~ 24382287 (+)
LOC113527444 chst15 other downstream 732720 24455659 ~ 24506076 (+)
LOC113527710 hmx3 other downstream 938105 24661044 ~ 24666608 (+)
dupd1 comtd1,cmtd1,LOC108273857 other downstream 1606270 25329209 ~ 25428112 (+)
G202397 LOC108273443 other downstream 1774776 25497715 ~ 25498919 (+)

Expression


Co-expression Network