Gene
RNA
| Item | Value |
|---|---|
| gene id | G201793 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047606.1 |
| NCBI id | CM018552.1 |
| chromosome length | 26563515 |
| location | 24156506 ~ 24156965 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU238756 | True | 254 | lncRNA | 0.54 | 2 | 24156506 | 24156965 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| mmp21 | mmp21 | coding | upstream | 75894 | 24067539 ~ 24080612 (+) |
| uros | uros | coding | upstream | 91522 | 24047563 ~ 24064984 (+) |
| ablim2 | ablim2 | coding | upstream | 556374 | 23541024 ~ 23600132 (+) |
| si:dkey-219e21.4 | LOC108273735 | coding | upstream | 684277 | 23466357 ~ 23472229 (+) |
| mfsd8 | mfsd8 | coding | upstream | 697001 | 23447143 ~ 23459505 (+) |
| hpdl | hpdl | coding | downstream | 110313 | 24267278 ~ 24273823 (+) |
| fam53b | fam53b | coding | downstream | 128116 | 24285081 ~ 24323614 (+) |
| oat | oat,LOC107569518,LOC107684577 | coding | downstream | 223336 | 24380301 ~ 24398447 (+) |
| cpxm2 | cpxm2,LOC106577304,LOC107569505 | coding | downstream | 382325 | 24539290 ~ 24589833 (+) |
| LOC113527709 | hmx2 | coding | downstream | 512253 | 24669218 ~ 24674576 (+) |
| G201753 | LOC108274257 | non-coding | upstream | 113263 | 24038938 ~ 24043243 (+) |
| G201604 | NA | non-coding | upstream | 295530 | 23775381 ~ 23860976 (+) |
| G201600 | NA | non-coding | upstream | 393240 | 23763065 ~ 23763266 (+) |
| G201297 | NA | non-coding | upstream | 416166 | 23738357 ~ 23740340 (+) |
| G201281 | NA | non-coding | upstream | 427496 | 23700719 ~ 23729010 (+) |
| G201782 | NA | non-coding | downstream | 46897 | 24203862 ~ 24236779 (+) |
| G201814 | NA | non-coding | downstream | 67913 | 24224878 ~ 24225626 (+) |
| G201843 | NA | non-coding | downstream | 180059 | 24337024 ~ 24338068 (+) |
| G201844 | NA | non-coding | downstream | 181169 | 24338134 ~ 24338730 (+) |
| G202007 | NA | non-coding | downstream | 323292 | 24480257 ~ 24482442 (+) |
| afap1 | afap1,LOC107733469,LOC107657296,LOC107584377 | other | upstream | 468089 | 23604837 ~ 23688417 (+) |
| polr2a | polr2a,LOC107733452,LOC107584383 | other | upstream | 757843 | 23272574 ~ 23398663 (+) |
| G201214 | NA | other | upstream | 826935 | 23324073 ~ 23329571 (+) |
| LOC117595720 | LOC107714409 | other | upstream | 838352 | 23311260 ~ 23318154 (+) |
| G201154 | NA | other | upstream | 950127 | 23205666 ~ 23206379 (+) |
| G201962 | NA | other | downstream | 224822 | 24381787 ~ 24382287 (+) |
| LOC113527444 | chst15 | other | downstream | 298694 | 24455659 ~ 24506076 (+) |
| LOC113527710 | hmx3 | other | downstream | 504079 | 24661044 ~ 24666608 (+) |
| dupd1 | comtd1,cmtd1,LOC108273857 | other | downstream | 1172244 | 25329209 ~ 25428112 (+) |
| G202397 | LOC108273443 | other | downstream | 1340750 | 25497715 ~ 25498919 (+) |
