G202007


Basic Information

Item Value
gene id G202007
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 24480257 ~ 24482442 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU239003
aggaggtgtggcctctgtgtctattacagtgaaggaggtgtggcctctgtgtctattacagtgaaggaggtgtggcctctgtgtctattacagtgaaggaggtgtggcctctgtgtctattacagtgaaggaggtgtggcctctgtgtctattacagtgaaggaggtgtggcctctgtgtctattacggtgaaggagacgtg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU239003 True 202 lncRNA 0.51 2 24480257 24482442

Neighbor

gene id symbol gene type direction distance location
oat oat,LOC107569518,LOC107684577 coding upstream 81810 24380301 ~ 24398447 (+)
fam53b fam53b coding upstream 156643 24285081 ~ 24323614 (+)
hpdl hpdl coding upstream 206434 24267278 ~ 24273823 (+)
ctbp2l ctbp2,LOC105926449,LOC107387783,LOC106955101,LOC103481571 coding upstream 245173 24132906 ~ 24235084 (+)
mmp21 mmp21 coding upstream 399645 24067539 ~ 24080612 (+)
cpxm2 cpxm2,LOC106577304,LOC107569505 coding downstream 56848 24539290 ~ 24589833 (+)
LOC113527709 hmx2 coding downstream 186776 24669218 ~ 24674576 (+)
bub3 bub3 coding downstream 194742 24677184 ~ 24685154 (+)
LOC113527566 ikzf5 coding downstream 378974 24861416 ~ 24864681 (+)
lrit1b lrit1 coding downstream 516508 24998950 ~ 25003270 (+)
G201844 NA non-coding upstream 141527 24338134 ~ 24338730 (+)
G201843 NA non-coding upstream 142189 24337024 ~ 24338068 (+)
G201782 NA non-coding upstream 243478 24203862 ~ 24236779 (+)
G201814 NA non-coding upstream 254631 24224878 ~ 24225626 (+)
G201793 NA non-coding upstream 323292 24156506 ~ 24156965 (+)
G202115 NA non-coding downstream 193240 24675682 ~ 24676158 (+)
LOC113527734 NA non-coding downstream 306878 24789320 ~ 24791405 (+)
LOC117598647 NA non-coding downstream 334039 24816481 ~ 24818352 (+)
G202172 NA non-coding downstream 363391 24845833 ~ 24891292 (+)
G202173 NA non-coding downstream 369845 24852287 ~ 24853885 (+)
G201962 NA other upstream 97970 24381787 ~ 24382287 (+)
afap1 afap1,LOC107733469,LOC107657296,LOC107584377 other upstream 791840 23604837 ~ 23688417 (+)
polr2a polr2a,LOC107733452,LOC107584383 other upstream 1081594 23272574 ~ 23398663 (+)
G201214 NA other upstream 1150686 23324073 ~ 23329571 (+)
LOC117595720 LOC107714409 other upstream 1162103 23311260 ~ 23318154 (+)
LOC113527710 hmx3 other downstream 178602 24661044 ~ 24666608 (+)
dupd1 comtd1,cmtd1,LOC108273857 other downstream 846767 25329209 ~ 25428112 (+)
G202397 LOC108273443 other downstream 1015273 25497715 ~ 25498919 (+)
G202374 NA other downstream 1015738 25498180 ~ 25502628 (+)
LOC117598538 NA other downstream 1517209 25999651 ~ 26005825 (+)

Expression


Co-expression Network