LOC113527710 (hmx3)


Basic Information

Item Value
gene id LOC113527710
gene name hmx3
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 24661044 ~ 24666608 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU239119
ctatctatctatctatctgggtTTATCTTCTTGGCGTTATTTGGAGCGCGTGAGGAATCTTTAAAAGCTTCTTAAAAGCTTGATATTTTCCTCTCGAGACATTTCTGGAAAGAGGGACTGGGTGTGTTTTTATGGTGATCCAATGGCCGAGACAACGCCGGAGACTCGCCCGTTTAAAGACTCTCCGTTCTCCATCAAAAATCTGCTGAACTGCGAGAGCAAGCCCACTCTGATCAAACCCAAAGCCATCATGAACTCCACCAAAGGACTGCTGGAGCACGGCTTCTCTCTGGCTCGCGTCGGAGACTTGAGTTTTCCGCGGTTTGATCTGCCGGTGCAGAGGTTTGGATTAGCGGCTCACTGGTGGTACCCGTATGGACACTTACACAGAACTGCAGTGACAGAGAGGCCGGCGGTTAGAGACTCATCCCCGGCGTCCGGTACAGACAGAGACTCACCGGAGCCGCGGCTCGCGCTAGAACCGGACGCCAAAGACGACGAGGAGAGCAAAAGCGTGGATGAAATCCTGCTGGAGGAAAGCGACACGGACGAGCCGAAGCGGGATGACGCACCGGAAGCGG
>XM_026915789.2
ctctcctccctctctcagtctctctctctctctctctctctctctctcagccgtGTTATTCCTCCTTAAATCCCATTTGCCATTGTGCTCAGAGCTCAGTGTCCGCATTTAACTTGGATGACATTTTGATTTCATCATTACCCTCCAGACGCGTCCATtcatcatctatctatctatctatctatctatctatctatctgggtTTATCTTCTTGGCGTTATTTGGAGCGCGTGAGGAATCTTTAAAAGCTTCTTAAAAGCTTGATATTTTCCTCTCGAGACATTTCTGGAAAGAGGGACTGGGTGTGTTTTTATGGTGATCCAATGGCCGAGACAACGCCGGAGACTCGCCCGTTTAAAGACTCTCCGTTCTCCATCAAAAATCTGCTGAACTGCGAGAGCAAGCCCACTCTGATCAAACCCAAAGCCATCATGAACTCCACCAAAGGACTGCTGGAGCACGGCTTCTCTCTGGCTCGCGTCGGAGACTTGAGTTTTCCGCGGTTTGATCTGCCGGTGCAGAGGTTTGGATTAGCGGCTCACTGGTGGTACCCGTATGGACACTTACACAGAACTGCAGTGACAGAGAGGCCGGCGGTTAGAGACTCATCCCCGGCGTCCGGTACAGACAGAGACTCACCGGAGCCGCGGCTCGCGCTAGAACCGGACGCCAAAGACGACGAGGAGAGCAAAAGCGTGGATGAAATCCTGCTGGAGGAAAGCGACACGGACGAGCCGAAGCGGGATGACGCACCGGAAGCGGCGGGCGCGGCGGCGGAGAGCTCGGACAAGCGGCCGCCGTGCCGGAAGAAGAAGACGCGCACGGTGTTCTCGCGCAGCCAGGTGTTCCAGCTCGAGTCCACCTTCGACGCTAAACGGTACCTGAGCAGCGCCGAGCGCGCGTGTCTGGCCTCCAGCCTGCAGCTCACCGAGACTCAGGTGAAGATCTGGTTCCAGAACCGGCGCAATAAGTGGAAGCGGCAGCTGGCGGCGGAGCTCGAGGCGGCGAGTCTGAGTCACACAGCCGCGCGCCGCATGGTTCCGGTTCCGGTGCTTTACCGCGAGGGTTCAGCCGGTGACACCGCCAGCGCCGCGTCCAGCCACGCCACAGCCGGCCAGCCGCTCCTCACCTTCCCACATCCGGTCTACTATCCACATCCGGTGGTCGCCGCCGTGCCGCTGCTCAGACCCGTATGAACACCGCGCGCGCTCGCGCTCATCATTCATGAACGATTTATAACGCGCCACCGTCATCTAATGTttctaatgaaataaaataaagaaaggaagaaaaaaaaacaacaacaaaacaatcgCTTgtattgctgaaaaaaaatcagctcagGAGGTgcagtcattattattattattattattattattattattattattattattaaatgagaGCTCCAGAATCGGTGATGGaagcatttctcttttttctttctttttttttttttttttaagtatatacATGTTTTTCATTAGAATttgtcacttcagtgtgtgtggaaGCTCTGCTCGGTGTTTGGCCgcgtttatacacacacacacacacacacacacacacacacacagagtcactgCAGTCAGAGCTTGAGTGTGTGGACAAtcactgattaacacacctgTCTTACACCTTTATACCAATGACGTCATGAATCTTGCGTTAAAACCATCCACTTTGcgttgttttgtttatttttatttttattttttttgggaaGCCCGGTTCtgtgtacatatttatatatagatagatataaaggGTGttgtaaatatacataaatcatGCTGGTGAGAAATGCAATGTTGTGTATATGAAACAGATTTTGATATTGTA

Function

symbol description
hmx3 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in ear development and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including embryo implantation; maternal process involved in female pregnancy; and neuromuscular process controlling balance. Predicted to be part of chromatin. Predicted to be active in nucleus.

GO:

id name namespace
GO:0003677 DNA binding molecular_function

KEGG:

id description
K09349 NKX5, HMX; homeobox protein Nkx-5

RNA

RNA id representative length rna type GC content exon number start site end site
TU239119 False 581 TUCP 0.54 2 24661225 24665525
XM_026915789.2 True 1845 mRNA 0.49 2 24661044 24666608

Neighbor

gene id symbol gene type direction distance location
cpxm2 cpxm2,LOC106577304,LOC107569505 coding upstream 71211 24539290 ~ 24589833 (+)
oat oat,LOC107569518,LOC107684577 coding upstream 262597 24380301 ~ 24398447 (+)
fam53b fam53b coding upstream 337430 24285081 ~ 24323614 (+)
hpdl hpdl coding upstream 387221 24267278 ~ 24273823 (+)
ctbp2l ctbp2,LOC105926449,LOC107387783,LOC106955101,LOC103481571 coding upstream 425960 24132906 ~ 24235084 (+)
LOC113527709 hmx2 coding downstream 2610 24669218 ~ 24674576 (+)
bub3 bub3 coding downstream 10576 24677184 ~ 24685154 (+)
LOC113527566 ikzf5 coding downstream 194808 24861416 ~ 24864681 (+)
lrit1b lrit1 coding downstream 332342 24998950 ~ 25003270 (+)
lrit2 lrit2 coding downstream 341240 25007848 ~ 25013291 (+)
G202007 NA non-coding upstream 178602 24480257 ~ 24482442 (+)
G201844 NA non-coding upstream 322314 24338134 ~ 24338730 (+)
G201843 NA non-coding upstream 322976 24337024 ~ 24338068 (+)
G201782 NA non-coding upstream 424265 24203862 ~ 24236779 (+)
G201814 NA non-coding upstream 435418 24224878 ~ 24225626 (+)
G202115 NA non-coding downstream 9074 24675682 ~ 24676158 (+)
LOC113527734 NA non-coding downstream 122712 24789320 ~ 24791405 (+)
LOC117598647 NA non-coding downstream 149873 24816481 ~ 24818352 (+)
G202172 NA non-coding downstream 179225 24845833 ~ 24891292 (+)
G202173 NA non-coding downstream 185679 24852287 ~ 24853885 (+)
LOC113527444 chst15 other upstream 154968 24455659 ~ 24506076 (+)
G201962 NA other upstream 278757 24381787 ~ 24382287 (+)
afap1 afap1,LOC107733469,LOC107657296,LOC107584377 other upstream 972627 23604837 ~ 23688417 (+)
polr2a polr2a,LOC107733452,LOC107584383 other upstream 1262381 23272574 ~ 23398663 (+)
dupd1 comtd1,cmtd1,LOC108273857 other downstream 662601 25329209 ~ 25428112 (+)
G202397 LOC108273443 other downstream 831107 25497715 ~ 25498919 (+)
G202374 NA other downstream 831572 25498180 ~ 25502628 (+)
LOC117598538 NA other downstream 1333043 25999651 ~ 26005825 (+)

Expression


Co-expression Network