LOC113527734


Basic Information

Item Value
gene id LOC113527734
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 24789320 ~ 24791405 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU239184
CATCCGTCTCAGCGTGCTCCCAGGTCAGATATCTACAGAATAAGAGGAGAATGAGTCAAAACCTCAAGAAGTATGCTGCAAACACTGGAGCACAAAATCAAGTTGTCCAGTATGGAGCAAGTGTTTCTAAGCAAATATCTGCCAATGAGACCACATTTACTGTGAAGAACAAGACACAGATTAATGTTCCTGCTAAGAATGGAACTGTTAGCATCTCAAAAGCAGAAATATACCAGGTGAGAAAATTGCACCAGTGATGAAGAAACACGACAACAACAATGTgctgtttaaaattttaaaaaaatggtgcGTGTAAAGGCCAAAATGTCATTTAAGGTGTTGAATATCCAAAATCTTGGTATCTTTATGTAGGTGTGGGATAAAATGTAGCTTAATTTCTTAATggtgttttacttttttcttttcttactgaACTTTAGAAAAAATTGGTTATGAACTTGGTAAATACTGAAGATTTTCTAAAccctgttattattgttattgctgtaagaaataaattatagaaTGATAGTCAGTCTACATTGGTCATACGATATTAGAATAAACTGATGCTAAACATGGAAAAGAATTTTTCTAATCCTGTTATGGAAATGTGATTTATTGTTGTCATGAATAAATATGGTATATAATTGTGctgaactacactacccatcagccccagcatgtcatatgactctcacctgtgtctctTTATACCTTGATTAgcaccactatttaagttctaGTTTTTCAGCGTCTCACTGTCAAGCTTCTGGTGttattgttgtagttgttgtttgttgttgtgtgcGCACCACAGTATCGCTGTAGGGATAAactcacatatttacaatatattttgaatccatttatttctgtaaagctgc
>XR_003402885.2
AACAATATGTGAGAACAGAACACATCCGTCTCAGCGTGCTCCCAGGTCAGATATCTACAGAATAAGAGGAGAATGAGTCAAAACCTCAAGAAGTATGCTGCAAACACTGGAGCACAAAATCAAGTTGTCCAGTATGGAGCAAGTGTTTCTAAGCAAATATCTGCCAATGAGACCACATTTACTGTGAAGAACAAGACACAGATTAATGTTCCTGCTAAGAATGGAACTGTTAGCATCTCAAAAGCAGAAATATACCAGGTGAGAAAATTGCACCAGTGATGAAGAAACACGACAACAACAATGTgctgtttaaaatt
>XR_004579280.1
ttacagaaaagaaaacttcaccataacaaagattacacacagtttttttttaatccgtgtATATGAAGCATCCACCACTGTActagtccctgtgaatgagctgttactatggaaaccataacgtattggaacgagcgcattaatataaacctgtgatctgcatctgcactactgtcaggaCCCCAGTCAGAATTAAACTATGAATAAGAGGAGAATGAGTCAAAACCTCAAGAAGTATGCTGCAAACACTGGAGCACAAAATCAAGTTGTCCAGTATGGAGCAAGTGTTTCTAAGCAAATATCTGCCAATGAGACCACATTTACTGTGAAGAACAAGACACAGATTAATGTTCCTGCTAAGAATGGAACTGTTAGCATCTCAAAAGCAGAAATATACCAGGTGAGAAAATTGCACCAGTGATGAAGAAACACGACAACAACAATGTgctgtttaaaatt

Function

GO: NA

KEGG:

id description
ko05323 Rheumatoid arthritis

RNA

RNA id representative length rna type GC content exon number start site end site
TU239184 True 887 lncRNA 0.35 4 24789342 24791405
XR_003402885.2 False 317 lncRNA 0.39 4 24789320 24790813
XR_004579280.1 False 459 lncRNA 0.38 4 24789898 24790813

Neighbor

gene id symbol gene type direction distance location
bub3 bub3 coding upstream 104166 24677184 ~ 24685154 (+)
LOC113527709 hmx2 coding upstream 114744 24669218 ~ 24674576 (+)
cpxm2 cpxm2,LOC106577304,LOC107569505 coding upstream 199487 24539290 ~ 24589833 (+)
oat oat,LOC107569518,LOC107684577 coding upstream 390873 24380301 ~ 24398447 (+)
fam53b fam53b coding upstream 465706 24285081 ~ 24323614 (+)
LOC113527566 ikzf5 coding downstream 70011 24861416 ~ 24864681 (+)
lrit1b lrit1 coding downstream 207545 24998950 ~ 25003270 (+)
lrit2 lrit2 coding downstream 216443 25007848 ~ 25013291 (+)
LOC113527669 LOC108273607 coding downstream 272195 25063600 ~ 25079829 (+)
LOC117598682 LOC108273610,LOC108273608,LOC108273529 coding downstream 355264 25146669 ~ 25153897 (+)
G202115 NA non-coding upstream 113162 24675682 ~ 24676158 (+)
G202007 NA non-coding upstream 306878 24480257 ~ 24482442 (+)
G201844 NA non-coding upstream 450590 24338134 ~ 24338730 (+)
G201843 NA non-coding upstream 451252 24337024 ~ 24338068 (+)
G201782 NA non-coding upstream 552541 24203862 ~ 24236779 (+)
LOC117598647 NA non-coding downstream 25076 24816481 ~ 24818352 (+)
G202172 NA non-coding downstream 54428 24845833 ~ 24891292 (+)
G202173 NA non-coding downstream 60882 24852287 ~ 24853885 (+)
LOC117598464 NA non-coding downstream 81549 24872954 ~ 24894054 (+)
G202182 NA non-coding downstream 144879 24936284 ~ 24936877 (+)
LOC113527710 hmx3 other upstream 122712 24661044 ~ 24666608 (+)
LOC113527444 chst15 other upstream 283244 24455659 ~ 24506076 (+)
G201962 NA other upstream 407033 24381787 ~ 24382287 (+)
afap1 afap1,LOC107733469,LOC107657296,LOC107584377 other upstream 1100903 23604837 ~ 23688417 (+)
G201214 NA other upstream 1459749 23324073 ~ 23329571 (+)
dupd1 comtd1,cmtd1,LOC108273857 other downstream 537804 25329209 ~ 25428112 (+)
G202397 LOC108273443 other downstream 706310 25497715 ~ 25498919 (+)
G202374 NA other downstream 706775 25498180 ~ 25502628 (+)
LOC117598538 NA other downstream 1208246 25999651 ~ 26005825 (+)

Expression


Co-expression Network