LOC117598647


Basic Information

Item Value
gene id LOC117598647
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 24816481 ~ 24818352 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU239191
GTAAGAGTTGGGCTTAACTGTCGTTCATTTCTTTTATCAAGAAGCCTTGATAACGTCGGAATTTCTCCAAGATGAGTAAAGTCACTGGAGCACAGGGCATCCTGGAACTGATCGATAACTATGACAGACCAGAACACACATATGCTGAAGGACTATACTCTGGCACCGACACATACGCTCATGCTTTCGAAGACGAACCCGGAAAGCGTGTTCCTAAAGCTGGAGCCGTAGCCGAGGCTGGTGTAGGACGAGCTGGAGCATCATGGGGC
>XR_004579278.1
TGACGAGCAGAAGTGAGGTGTATAAAGAGAGGTGTGCTAAAAGGACAGAATTAGGTTTTGGTAAGAGTTGGGCTTAACTGTCGTTCATTTCTTTTATCAAGAAGCCTTGATAACGTCGGAATTTCTCCAAGATGAGTAAAGTCACTGGAGCACAGGGCATCCTGGAACTGATCGATAACTATGACAGACCAGAACACACATATGCTGAAGGACTATACTCTGGCACCGACACATACGCTCATGCTTTCGAAGACGAACCCGGAAAGCGTGTTCCTAAAGCTGGAGCCGTAGCCGAGGCTGGTGTAGGACGAGCTGGAGCATCATGGGGCATCTTTTTCAGCTGAAGCTAAAGGTCCAAATGCTTCTGCCAAGGCT

Function

GO: NA

KEGG:

id description
ko03013 Nucleocytoplasmic transport

RNA

RNA id representative length rna type GC content exon number start site end site
TU239191 False 269 lncRNA 0.49 3 24816541 24818306
XR_004579278.1 True 375 lncRNA 0.47 3 24816481 24818352

Neighbor

gene id symbol gene type direction distance location
bub3 bub3 coding upstream 131327 24677184 ~ 24685154 (+)
LOC113527709 hmx2 coding upstream 141905 24669218 ~ 24674576 (+)
cpxm2 cpxm2,LOC106577304,LOC107569505 coding upstream 226648 24539290 ~ 24589833 (+)
oat oat,LOC107569518,LOC107684577 coding upstream 418034 24380301 ~ 24398447 (+)
fam53b fam53b coding upstream 492867 24285081 ~ 24323614 (+)
LOC113527566 ikzf5 coding downstream 43064 24861416 ~ 24864681 (+)
lrit1b lrit1 coding downstream 180598 24998950 ~ 25003270 (+)
lrit2 lrit2 coding downstream 189496 25007848 ~ 25013291 (+)
LOC113527669 LOC108273607 coding downstream 245248 25063600 ~ 25079829 (+)
LOC117598682 LOC108273610,LOC108273608,LOC108273529 coding downstream 328317 25146669 ~ 25153897 (+)
LOC113527734 NA non-coding upstream 25076 24789320 ~ 24791405 (+)
G202115 NA non-coding upstream 140323 24675682 ~ 24676158 (+)
G202007 NA non-coding upstream 334039 24480257 ~ 24482442 (+)
G201844 NA non-coding upstream 477751 24338134 ~ 24338730 (+)
G201843 NA non-coding upstream 478413 24337024 ~ 24338068 (+)
G202172 NA non-coding downstream 27481 24845833 ~ 24891292 (+)
G202173 NA non-coding downstream 33935 24852287 ~ 24853885 (+)
LOC117598464 NA non-coding downstream 54602 24872954 ~ 24894054 (+)
G202182 NA non-coding downstream 117932 24936284 ~ 24936877 (+)
G202215 LOC108273604,LOC107756949,LOC107569511,LOC104927182,LOC103142276,LOC103481437 non-coding downstream 153268 24971620 ~ 24973240 (+)
LOC113527710 hmx3 other upstream 149873 24661044 ~ 24666608 (+)
LOC113527444 chst15 other upstream 310405 24455659 ~ 24506076 (+)
G201962 NA other upstream 434194 24381787 ~ 24382287 (+)
afap1 afap1,LOC107733469,LOC107657296,LOC107584377 other upstream 1128064 23604837 ~ 23688417 (+)
G201214 NA other upstream 1486910 23324073 ~ 23329571 (+)
dupd1 comtd1,cmtd1,LOC108273857 other downstream 510857 25329209 ~ 25428112 (+)
G202397 LOC108273443 other downstream 679363 25497715 ~ 25498919 (+)
G202374 NA other downstream 679828 25498180 ~ 25502628 (+)
LOC117598538 NA other downstream 1181299 25999651 ~ 26005825 (+)

Expression


Co-expression Network