G202182


Basic Information

Item Value
gene id G202182
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 24936284 ~ 24936877 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU239219
ACAACATTTCACAGGAACACGCATACATAgatcacatatacacatatacattataaatagGTTTGCCTCTGAATTTAttgctgtgtattttgttttgtttttggttgaCACACAACAAAAATAGATTTATAACTGCACATAACATTACAGTAAACTGCTGGATGTATTTTGAATGCACATCGTTTATAGTCTTTacaatatatacttttttaacATAAAGTGCAACTCGTTTGATTTTAACTCTTGCAATCATTTTAGTTCAAGTACTTGATCATATAATGATTCTGTATTTGTGTTAATCGCTGTAATCAACAGAtctgatcattttattattcagcaaaaatgttaaaactttcTCATCTACAGATTAACCTGACATGCTGACACGACATTTTTCTATTCACGGCAAACTTTCTATTCACACTGAAATTGAAAAGAAATTGCTAACCTTTTTAAATATAACCACAAattcacattttgtttatgGATTGTGGCACATAATCAGTGACTCTTTACACATTTggaaatgaatatgaattaacTGCAAGAGCCTCATAATACCTTGTGCAGGATATGTGCAAAATTTCCAACAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU239219 True 594 lncRNA 0.30 1 24936284 24936877

Neighbor

gene id symbol gene type direction distance location
LOC113527566 ikzf5 coding upstream 71603 24861416 ~ 24864681 (+)
bub3 bub3 coding upstream 251130 24677184 ~ 24685154 (+)
LOC113527709 hmx2 coding upstream 261708 24669218 ~ 24674576 (+)
cpxm2 cpxm2,LOC106577304,LOC107569505 coding upstream 346451 24539290 ~ 24589833 (+)
oat oat,LOC107569518,LOC107684577 coding upstream 537837 24380301 ~ 24398447 (+)
lrit1b lrit1 coding downstream 62073 24998950 ~ 25003270 (+)
lrit2 lrit2 coding downstream 70971 25007848 ~ 25013291 (+)
LOC113527669 LOC108273607 coding downstream 126723 25063600 ~ 25079829 (+)
LOC117598682 LOC108273610,LOC108273608,LOC108273529 coding downstream 209792 25146669 ~ 25153897 (+)
LOC113527238 LOC108273610,LOC108261801 coding downstream 218115 25154992 ~ 25162871 (+)
LOC117598464 NA non-coding upstream 42230 24872954 ~ 24894054 (+)
G202172 NA non-coding upstream 44992 24845833 ~ 24891292 (+)
G202173 NA non-coding upstream 82399 24852287 ~ 24853885 (+)
LOC117598647 NA non-coding upstream 117932 24816481 ~ 24818352 (+)
LOC113527734 NA non-coding upstream 144879 24789320 ~ 24791405 (+)
G202215 LOC108273604,LOC107756949,LOC107569511,LOC104927182,LOC103142276,LOC103481437 non-coding downstream 34743 24971620 ~ 24973240 (+)
G202218 NA non-coding downstream 37027 24973904 ~ 25062169 (+)
G202273 NA non-coding downstream 150038 25086915 ~ 25088713 (+)
G202286 NA non-coding downstream 173411 25110288 ~ 25111484 (+)
LOC113527241 LOC108261801,LOC108273610 non-coding downstream 197574 25134451 ~ 25135165 (+)
LOC113527710 hmx3 other upstream 269676 24661044 ~ 24666608 (+)
LOC113527444 chst15 other upstream 430208 24455659 ~ 24506076 (+)
G201962 NA other upstream 553997 24381787 ~ 24382287 (+)
afap1 afap1,LOC107733469,LOC107657296,LOC107584377 other upstream 1247867 23604837 ~ 23688417 (+)
G201214 NA other upstream 1606713 23324073 ~ 23329571 (+)
dupd1 comtd1,cmtd1,LOC108273857 other downstream 392332 25329209 ~ 25428112 (+)
G202397 LOC108273443 other downstream 560838 25497715 ~ 25498919 (+)
G202374 NA other downstream 561303 25498180 ~ 25502628 (+)
LOC117598538 NA other downstream 1062774 25999651 ~ 26005825 (+)

Expression


Co-expression Network