G202215 (LOC108273604,LOC107756949,LOC107569511,LOC104927182,LOC103142276,LOC103481437)


Basic Information

Item Value
gene id G202215
gene name LOC108273604,LOC107756949,LOC107569511,LOC104927182,LOC103142276,LOC103481437
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 24971620 ~ 24973240 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU239263
AGTGTACTCTGGTCCTGATGACTCCTCCTCCGAGAATGATCTTGAGCCAAATCCGTCCTCGATGGGCAGAGCACTGGTTGTGGtgttgatgttggtgtttgtggtgGTGCTCAGTCCTTTCCTTTTCAGGCTGCGTTCCTCCATCTTGATAGTGTCATAGAGTCCTGTGGGACCCTCCTCCAGCAGCACGTTCCTCTCGGAGTAAGACGGCTTCATCTGGCAGACGTGTCGCAGCACGAGCAGAGCGGGAGCGTACAGCATGTTGACGAGGCCCATCCCCAAATTTAGTTGGACAAACCCCAGGTTGTGGACGATCTGTCCGGCCACGATGGGCCCCATGGCGTAGGCCACGGAGTACGAGATGTCTGCAATGGCGTACACACTGCCGTAAACAGACACATGACGAACGTCGACGAGGAAGGCCAGCGTAGGCAATAGCGCCGTGTCGACGAGTGCGATCCCGAAGCAGATACCACACAGAGGCACCATGAGCTGTCCGAAGTTCTTGCAAGCAGGCACGGTGCATGAGCTCGCGCCAATGATCACCATGCCCAGAGCGCCGTAAAACCACTGCAGGTGCGGGTACTTGGCCGCCAGTTTGACCGTCACGTACACGCCAAGAACATGCGGGAAGAACGAGGGCAGCCATGTCAGGCCCATCTCCCACTTGGTGGCGTGCATCGTGGTCTCCATCCAGTTGGCCACCGTGGGTTCGAGGAAAGCCAGCGGCACATTGCAGACTGTAAGCGCCCCCGCTACCACGGCGATATACGGGTCCACCATGAGCCTGTGGATGGGAGTGCCGATGGGCATGTTCTCACGTGACCGGTCTGAGAAGGGCTTGATCACAGTGAGCAGCAGGAAACCGTCGGCCAGGCACACACACGCCAACACGACGAACGGTACACGCTTACCGGCGAACTCGTAGAGCACTCCGCCAAACGGTGGTGCCACAAGGCTGCCAAATGATATGAACGCCAGTGCGATACCGAGCGCACGACTGCGTTCCGCCTCCTCCGTGTACTTGTCGGCGATCATTGCGATGCCTGATGTGTCTGCGAACGCCGAACCAAGACCCTGTAGACTGCGTGCCACAAACAACGTGGCATAGTTCTCAGCAAACGCGAACACGCTGGTGGACAAGAACATGACCGTCAGCCCAATCAGGAGTGGGATGTCGTAACCCACCCGGTCAATAAACGTCCCCGATAAAGGGTTCACAAGGAGCTGGACGATGGCCTTGGAGGCGAACAGAACTCCTATCTTTACGTCCAGGTTCTCCTTAGTGCTGTCGGTGGAGATGTTATTGTGTGTCTTTGCTTCATTTTCGCTCTCCAGGTCGGCCAGGTAGTCTGGGATAATTGGCACGATCACCATGTACAGCATGTTGTCTAGGAGCAGCGCCACGCACACGATCACTAGGATAATCCTCCGCTGGCGCTCGGGATCGTGCACCGCCCCGCCGAGCTGCTTCGTCCTCTCGGAAAGTTTCTGAGCAGCTGATCTGGCCAGACCGAGAGACCCTCCGGACTCCTCCATGCTTCAAAGTAAAGGACAATCTCTCCTCCTGCTTTagctgctgtttatttatttatttttcctcccCGAAGCGCAAAGTTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU239263 True 1621 lncRNA 0.57 1 24971620 24973240

Neighbor

gene id symbol gene type direction distance location
LOC113527566 ikzf5 coding upstream 106939 24861416 ~ 24864681 (+)
bub3 bub3 coding upstream 286466 24677184 ~ 24685154 (+)
LOC113527709 hmx2 coding upstream 297044 24669218 ~ 24674576 (+)
cpxm2 cpxm2,LOC106577304,LOC107569505 coding upstream 381787 24539290 ~ 24589833 (+)
oat oat,LOC107569518,LOC107684577 coding upstream 573173 24380301 ~ 24398447 (+)
lrit1b lrit1 coding downstream 25710 24998950 ~ 25003270 (+)
lrit2 lrit2 coding downstream 34608 25007848 ~ 25013291 (+)
LOC113527669 LOC108273607 coding downstream 90360 25063600 ~ 25079829 (+)
LOC117598682 LOC108273610,LOC108273608,LOC108273529 coding downstream 173429 25146669 ~ 25153897 (+)
LOC113527238 LOC108273610,LOC108261801 coding downstream 181752 25154992 ~ 25162871 (+)
G202182 NA non-coding upstream 34743 24936284 ~ 24936877 (+)
LOC117598464 NA non-coding upstream 77566 24872954 ~ 24894054 (+)
G202172 NA non-coding upstream 80328 24845833 ~ 24891292 (+)
G202173 NA non-coding upstream 117735 24852287 ~ 24853885 (+)
LOC117598647 NA non-coding upstream 153268 24816481 ~ 24818352 (+)
G202218 NA non-coding downstream 664 24973904 ~ 25062169 (+)
G202273 NA non-coding downstream 113675 25086915 ~ 25088713 (+)
G202286 NA non-coding downstream 137048 25110288 ~ 25111484 (+)
LOC113527241 LOC108261801,LOC108273610 non-coding downstream 161211 25134451 ~ 25135165 (+)
G202290 NA non-coding downstream 213542 25186782 ~ 25189327 (+)
LOC113527710 hmx3 other upstream 305012 24661044 ~ 24666608 (+)
LOC113527444 chst15 other upstream 465544 24455659 ~ 24506076 (+)
G201962 NA other upstream 589333 24381787 ~ 24382287 (+)
afap1 afap1,LOC107733469,LOC107657296,LOC107584377 other upstream 1283203 23604837 ~ 23688417 (+)
G201214 NA other upstream 1642049 23324073 ~ 23329571 (+)
dupd1 comtd1,cmtd1,LOC108273857 other downstream 355969 25329209 ~ 25428112 (+)
G202397 LOC108273443 other downstream 524475 25497715 ~ 25498919 (+)
G202374 NA other downstream 524940 25498180 ~ 25502628 (+)
LOC117598538 NA other downstream 1026411 25999651 ~ 26005825 (+)

Expression


Co-expression Network