dupd1 (comtd1,cmtd1,LOC108273857)


Basic Information

Item Value
gene id dupd1
gene name comtd1,cmtd1,LOC108273857
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 25329209 ~ 25428112 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU239415
TGAATCGCGGTCAGCTGTAATTCCACTTCCGGCTCGCGCGCTGTTCCTGTGTCTGAGGGAGCAGTAATAATCTGATCTGCATTAGCACTGCTGTTTATAACCGCTTATAACCGgtAAAGTCCGGAGCAGACGGATCAGTATGAGTAACTTTAAGAGCCATGTGGCGGGGAAAGACGACCCTGTGATGCAGTACGTCCTCAACCACTCGCTGAGAGAACACCCGGCTCTGAAGAAGCTCCGCCTCAAAACCATGGAGCACAGGGGGAACCCTATGATGGTGGCGTGTGAACAGTCTCAGTTCATGGCAAACCTGGTGAGACTCATCAAAGCCAAGAAGGCCATCGAGATCGgtgtGTATACGGGCTATAACACTCTGAGCGTCGCGCTGGCGTTACCTGACGACGGAAAGGTGGTGGCGTGTGACGTGAGCGAGGAATACGCCAACATCGGCAAACCCTTCTGGAAAGAGGCCGGCGTTGAACACAGAATAGACCTGCGCGTGCAGCCGGCGCTCAGAACTCTGGATGATCTACTGGCTGCAGGGGAGGCCGAGACTTTCGATTTTGTGTTTATCGACGCTGATAAGCAGAATTACGACAATTATTACGAGAAATCACTGCAGCTGGTGAGGAAAGGAGGAATCATCGCCATCGATAACG
>TU239421
acacacacgcacacacacacacacacacacacacacacacaccacggttaccATAGTTACAGTAAGTAGTATGCATTTTGGGACACAGCCATGTAGACACACTAGTTTGCTATTTTAACAATCGGTTTGGGACACAGACATTAAAATCTTATCCCTTACTGAGAACATTcatgatattgtgtgtgtgttttttatatttgcaatatattatataacgaTATTAAAccaataatacaatatatttcaataactaacacaatattatatcatcatgaacaataatatcaaataatatCGTTGCTCGATTCTTTCTGGAAATATATTTCTCAGGACAAATTTGCAGCGGCATCGTAAGTCGAAAAACAACACGACGACTCTTAAAGCAACGTTTAAAAGTACAGTCTTTGTAATGTTTCGAGgaaaagtgggcggagctaagcAGATTCGTTTCagctgggggcggagctagaaacgaagaaaaaatgtaaacagaagcctgaaatgaaAAAGCTAGCTTTTCAGAGATTCGCtgcgtgaaaaaaaaaagttttatctCAATATCTTTgaaatattgaattattttactttgaataaatgtttaaatgttacaaactgcaactttaaatatagtttaaaaaaaaaaaaaaaaaaaaaaaaaagggagagacGCTGCCAAGCTCCTAGTAAACGTAGTGctttttaaattcaatattGCGATAATATCGTAAGAAAACGTAATTAAATCATCGTAATAACGCTTTTATGGATGTTTATATCAGCacgttttgtgttttttggcacaaacttgacaaaaaaaacatcctgatgATCTTCACAACATTCAGACACATTAGAAAATTCAATAACAGGTCCATCATtgaaaaaagtaagaaaaaaatcagcgtTAAaggatttaaatataaaaacatacagtcGAGATCTCAGtgaaaaactgcaattttattacaaatgataGAAAAGGAAGTGAAAGAGGAACCGTCGCTCATCAGATGGGTTTGGACCTGAGGgggactgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttcctcctcCTCACTGGTACCAGGGGGTCTTTCGGACCCAGCGCAGCGTGAAGCCGGCGTCCGTGCGGATCTTGATGGACGCTGCCTCGGCCTCGCGCACCGTCTCCTTCACCGACTGCATCAGATTCTGAGCGTTGTGGACCAACATCTCCgtcgCTGCTCAGACTCCTCCTCGCTGATGTTGGTACGTCCCAACATGGTGGCCTTCACTGTGGAGAGAATCTTCAGCTGAGTGCTGATGGTGGGGATGCgctcacac
>TU239428
ACTTCTTtattggagtgtgtgtgcatacgtatgtatgtgtgtatatatatatagagtgtatGTGCACGACTGTAAGACAGTGTAAGATGTACATCATGCATATTTAACACTTGTGCGTGTTTTTTTGAGTTTGGTGTGCTGCaagaaacaaacacatatacactgcTAAGCTAATAACAAAGACTTTAAAACACTCCAGTTAATAAAGTTACATCACAGACATAACAATGCCTTATCGCATCATTTCCAGAGATTTATACGACCAGAGCTGCATTATCTCATTTGGACCTAATAAAAAAAGACCTGTGTtcatctttgtctctttctccaAGACTTGTATGAGTGTAAAATCAGAGCTcacgcatcacttcctgtcactGATACGTAGCGGAGGCTCAGGAAGTGCTGTTCGCTGCACTGTTCTCAACCGAACAAGTTTAAGTCAttatagcagttttttttttttttttttttgcttaagaATGCCCTGGAAGCAACTGTAAACAAAAGTAGAGGCACGCGAGTCATGTCGCTTAAGATGTATGAGAAAGAGGtggattgagagagagagagagagagagagagacagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagatagagagagagagagagagagagagagacagagagagagagagagacagagagagagagacagagagagagagagagagagagagagagagagagagagacagagagagacagagagagagagagagagagagagagagagagaga
>TU239433
TTCACGGAGGAGTTGGAGTCGAGTGCGTATTTGGCGGCGATGCCGAAGCGTGTGTTGTTGCTCCCGGCCGCCCAGGCCAGATTCACCGCCGTCTCCAGATTATCACTCAGCTTCTGATACACAGAGCCTCCAAACTCAGAGCCGTCGTTCCTGcatgtgcacgcacacacacacacacacacacacgtgtacacacaggcacacacacacacacacacttcaacatgACTGCAGATAAATACTGTTAGCTCACACCTAACTCCTAACTTCAGCCTGAAGAACATCATCTCACTCCAGCTAAATGTCCTGATCCTGACATTCAgactgaactctgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttcctcctcCTCACTGGTACCAGGGGGTCTTTCGGACCCAGCGCAGCGTGAAGCCGGCGTCCGTGCGGATCTTGATGGACGCTGCCTCGGCCTCGCGCACCGTCTCCTTCACCGACTGCATCAGATTCTGAGCGTTGTGGACCAACATCTCCgtcgcctacacacacacacacacacacacacacacacatatacacacgttTGTTACAAATGCTGCTTGTAATAAATctgcactgagtgtgtgtgtgtgtgtgagtgatttctTTTATAGTTAACGTGTGATGCACTGGAGCTGAC
>XM_034309206.1
cacacacacacacacacacacacacacacacacacacacgtgttcttGTCTACAGCTTTAAGAACTGCGTAGAGACAAGACGAAACTGAAAGCTTCCAGAGAAATCGGTGATGTAATCCAGATGACAAATGGCGTCTCATGGATTGAAGTCTGGTCTGAAGGCTGATGTTCCTGAGGAAAATCAAGAATACGTGACACCCAGTAACTACGAGCTGGGGAAGCTGTTGGCGCGCAGCACTGTAGTGTACACACACGTCAACGAAGTGTGGCCCAACATCTTTATAGGAGATGAgcaGACAGCACGGAACCGTTATAGCTTACAAAAACTGGGTGTGACTCACGTTCTGAATGCTGCAGAAGGCGAGAGGAACAGTGTATGTACTGGAGCTGGTTACTATAGCAACATGGACATAGAGTACTATGGCATCGAGGCAGAAGACATTCCTTCATTCAACATCAGTGTGCACTTCTTCACTATGGCTGAGTATATGAGACGTGTCCTGAGTAATGCACAGAACAAGCTGCTAGTACACTGTGTAATGGGACGCAGTCGCTCGGCTACACTGGTCCTCGCCTACCTGATGATTGAGGAAAAGATGACGCTGGTGGAGGCCATCGAGCAGGTGAAGCGCCACAGACAGATCATCCCTAACTGGGGCTTCCTGAAGCAGCTGAGGGAGCTCGATGCCTTCCTTCTGGAGCAGaggagtgaacacacacacacacagactgcagaCGGTACTGAGAGGACCAAACAATAACACCAACAATAAAGAATTCCTGTCAGATGAATTCCTGTCAGTTCGTTACGAGTGCAATTCgctttaaatcaatattttatcatttactgACATtgcagctagctagttaacgtTTCCCATGTATGTCCATGTATCTGTGCTAGAATGTACACCGAGTTGCACGTTTATTCAGTCATTTAAGTCTTGTACCTACATTAATGGTCCTCCCTTTTCACGGATGGAGCAACAGATGCACTACAAAGTGACCTGTATGGTAGGTGTAAATTTTTACGTagataaatatttctttattgaatacttatttcattaaataataatttaataatttactcACACTATACTCACCCTACACACTTTATACTCCACCTActcacactatactcacactacacacactgtactcagCCTACCCTCATACTACACACTTTATACCCCACATAGCCACACTATACTCAGcctacacacatactacacactttATACTCCACCTAGCCACACTATACTCAGcctacacacatactacacactttATACTCCACCTAGCCACACTATACTCAGcctacacacatactacacactttATACTCCACCTAGCCACACTGTACTCAGCCTACCCTCATACTAGCCACACTACACtcaccctacacacactgtactcagCCTACCCTCATACTACACACTTTATACCCCACCTAGCCACACTATACTCAGcctacacacatactacacactttATACTCCACCTAGCCACACTATACTCAGcctacacacatactacacactttATACTCCACCTAGCCACACTATACTCAGcctacacacatactacacactttATACTCCACCTAGCCACACTATACTCAGcctacacacatactacacactttATACTCAGCCTACCCTCATACTAGCCACACTACACtcaccctacacacactgtactcgGGCTACCCTCAtactacacactttacactccaCCTAGTCACACTATACACAGcctacacacatactacacattTCATACTCTACCTAGCCACACTATACACAGcctacacacatactacacattTCATACTCTACCTAGCCACACTATACTCAGCCTACACTAATACTACTCACCATACACACTTTATATTCCACTTCctcacactatactcacactaCCCTCATACTACACACTTTATACTCCACCTAGCCACACTATACTCAGCCTACACCAACCCTGCTCACCCTACACTTTATACTCCACATAGCCACACTATACTCAGCCTACACACTTTATACTCCACCTAGTCATCCTACTCATACTACACTTTATACTCCAACTAGTCACACTATACTCACCCTACATTCATACTACTCAACACTACAGACATTATAGTCCACCTActcacactatactcacactaCAGACATTATACTCCACCTAGTCACACTACTAACACTACTGACACTGTACTCCACCTAGTCATCCTACTCATACTACACACTTTATACTCCAACTAGTCACACTATACTCACCCTACATTCATACTACTCAAACTACAGACATTATACTCCACCTACTCACACTATACTCCACCTAGTCACACTACTCTCCCTAGGAGTGGTATTCTGGTCAGTGTGGCTCTAACACTCACTAAAACACAGATCTTACATGTTACATGGTAATGAGCTGATACACtgaatgaggtgtgtgtttagGCCAAAATACTTCAATGTGCAATACAGAAGGAATgttcagcaacacacacacacacacacacacacacacacacacacacacacacacacacacacacatcgaatGCAGAAGTGACACAGGAATAATAATGAC

Function

symbol description
comtd1 Predicted to enable S-adenosylmethionine-dependent methyltransferase activity. Predicted to act upstream of or within methylation. Is expressed in liver. Orthologous to human COMTD1 (catechol-O-methyltransferase domain containing 1).

NR:

description
PREDICTED: uncharacterized protein LOC108426746

GO: NA

KEGG:

id description
K14165 K14165; atypical dual specificity phosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
TU239415 False 659 TUCP 0.53 7 25329209 25354290
TU239421 False 1325 lncRNA 0.39 3 25344206 25428112
TU239428 False 816 lncRNA 0.41 2 25411258 25415399
TU239433 False 690 lncRNA 0.52 2 25357936 25428009
XM_034309206.1 True 2598 mRNA 0.44 4 25400520 25411259

Neighbor

gene id symbol gene type direction distance location
LOC113527655 LOC108274290 coding upstream 58556 25260740 ~ 25270653 (+)
LOC113527238 LOC108273610,LOC108261801 coding upstream 166338 25154992 ~ 25162871 (+)
LOC117598682 LOC108273610,LOC108273608,LOC108273529 coding upstream 175312 25146669 ~ 25153897 (+)
LOC113527669 LOC108273607 coding upstream 249380 25063600 ~ 25079829 (+)
lrit2 lrit2 coding upstream 315918 25007848 ~ 25013291 (+)
polr3a polr3a coding downstream 281781 25709893 ~ 25745120 (+)
tbata LOC108273511 coding downstream 345402 25773514 ~ 25791680 (+)
star2 LOC108274109 coding downstream 375677 25803789 ~ 25818928 (+)
ndr2 nodal coding downstream 541857 25969969 ~ 25973840 (+)
lrrc20 lrrc20 coding downstream 546919 25975031 ~ 25981707 (+)
G202342 NA non-coding upstream 38244 25290741 ~ 25290965 (+)
G202310 LOC106943100,LOC106904307,LOC107373152 non-coding upstream 129262 25199710 ~ 25199947 (+)
G202290 NA non-coding upstream 139882 25186782 ~ 25189327 (+)
LOC113527241 LOC108261801,LOC108273610 non-coding upstream 194044 25134451 ~ 25135165 (+)
G202286 NA non-coding upstream 217725 25110288 ~ 25111484 (+)
G202336 LOC108443317,LOC108273866,LOC107597760,LOC102207794 non-coding downstream 10781 25438893 ~ 25442225 (+)
G202386 NA non-coding downstream 35694 25463806 ~ 25464167 (+)
G202400 NA non-coding downstream 75032 25503144 ~ 25513154 (+)
G202401 NA non-coding downstream 77243 25505355 ~ 25565927 (+)
G202403 NA non-coding downstream 81168 25509280 ~ 25509506 (+)
LOC113527710 hmx3 other upstream 662601 24661044 ~ 24666608 (+)
LOC113527444 chst15 other upstream 823133 24455659 ~ 24506076 (+)
G201962 NA other upstream 946922 24381787 ~ 24382287 (+)
afap1 afap1,LOC107733469,LOC107657296,LOC107584377 other upstream 1640792 23604837 ~ 23688417 (+)
G201214 NA other upstream 1999638 23324073 ~ 23329571 (+)
G202397 LOC108273443 other downstream 69603 25497715 ~ 25498919 (+)
G202374 NA other downstream 70068 25498180 ~ 25502628 (+)
LOC117598538 NA other downstream 571539 25999651 ~ 26005825 (+)

Expression


Co-expression Network