G202354


Basic Information

Item Value
gene id G202354
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 25403842 ~ 25409006 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU239473
tacactctgaccacgctcacactatactcacactacactctatcCACGctcacactatactcacactacactctatcCACGCCACTatactcacactacactctgtccacactcacactatactcacactacactctgaccacactcacactatactcACCCTACACTCTGACcacactcacactatactcacactacactctgaccacactcacactatactcacaCTACACTCTGACcacactcacactatactcACCCTACACTCTAACcacactcacactatactcACCCTACACTCTAACcacactcacactatactcACCCTACCCTCTGtccacactcactttaca
>TU239474
tacactctgaccacgctcacactatactcacactacactctatcCACGctcacactatactcacactacactctatcCACGCCACTatactcacactacactctgtccacactcacactatactcacactacactctgaccacactcacactatactcACCCTACACTCTGACcacactcacactatactcacactacactctgaccacactcacactatactcacCCTACACTCTGACcacactcacactatactcACCCTACACTCTGACcacactcacactatactcACCCTACACTCTAACcacactcacactatactcACCCTACACTCTAACcacactcacactatactcACCCTACCCTCTGtccacactcactttaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU239473 False 353 lncRNA 0.46 2 25403842 25409006
TU239474 True 386 lncRNA 0.47 2 25403842 25409006

Neighbor

gene id symbol gene type direction distance location
LOC117598572 LOC108273858 coding upstream 5825 25394338 ~ 25398017 (+)
LOC117598571 LOC108273860,LOC108415358 coding upstream 9540 25390697 ~ 25394302 (+)
LOC113524867 LOC108273861,LOC108415359,LOC107676426,LOC107597761,LOC107748324,LOC107718692,LOC104943471,LOC108416695 coding upstream 13961 25386835 ~ 25389881 (+)
LOC117598570 dusp13,LOC108273859,LOC107748394,LOC107595212 coding upstream 17454 25382865 ~ 25386388 (+)
LOC113527655 LOC108274290 coding upstream 133189 25260740 ~ 25270653 (+)
polr3a polr3a coding downstream 300887 25709893 ~ 25745120 (+)
tbata LOC108273511 coding downstream 364508 25773514 ~ 25791680 (+)
star2 LOC108274109 coding downstream 394783 25803789 ~ 25818928 (+)
ndr2 nodal coding downstream 560963 25969969 ~ 25973840 (+)
lrrc20 lrrc20 coding downstream 566025 25975031 ~ 25981707 (+)
G202339 NA non-coding upstream 34187 25369330 ~ 25369655 (+)
G202342 NA non-coding upstream 112877 25290741 ~ 25290965 (+)
G202310 LOC106943100,LOC106904307,LOC107373152 non-coding upstream 203895 25199710 ~ 25199947 (+)
G202290 NA non-coding upstream 214515 25186782 ~ 25189327 (+)
LOC113527241 LOC108261801,LOC108273610 non-coding upstream 268677 25134451 ~ 25135165 (+)
G202336 LOC108443317,LOC108273866,LOC107597760,LOC102207794 non-coding downstream 29887 25438893 ~ 25442225 (+)
G202386 NA non-coding downstream 54800 25463806 ~ 25464167 (+)
G202400 NA non-coding downstream 94138 25503144 ~ 25513154 (+)
G202401 NA non-coding downstream 96349 25505355 ~ 25565927 (+)
G202403 NA non-coding downstream 100274 25509280 ~ 25509506 (+)
LOC113527710 hmx3 other upstream 737234 24661044 ~ 24666608 (+)
LOC113527444 chst15 other upstream 897766 24455659 ~ 24506076 (+)
G201962 NA other upstream 1021555 24381787 ~ 24382287 (+)
afap1 afap1,LOC107733469,LOC107657296,LOC107584377 other upstream 1715425 23604837 ~ 23688417 (+)
G201214 NA other upstream 2074271 23324073 ~ 23329571 (+)
G202397 LOC108273443 other downstream 88709 25497715 ~ 25498919 (+)
G202374 NA other downstream 89174 25498180 ~ 25502628 (+)
LOC117598538 NA other downstream 590645 25999651 ~ 26005825 (+)

Expression


Co-expression Network