G202374


Basic Information

Item Value
gene id G202374
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 25498180 ~ 25502628 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU239496
tggaagaagaagaagaagaggaagaggaagaggaggaagaggaggaggaggaggtggtgtcCTTCACCGAggACGATCAGTACTCAGAGCTCAGCTTCGGCTCCCCCGCCGCCCCCAGCAGGCCCACCTGCCGCCCCACCTGCCGCCCCACCTGCCGCCCGCCCGCTCAGCCACGCCTCCGAGCTCCACGCCCGGGGAAGAGGAAGCGGGATGGAGACGTGCTGGAGGTGATGAGGcagctggaggaggagcagaTGGAGGGTCTGAGGCGGGATTATGAGCAGAGGGAGCGTCACTTCCAGCTGCTGCTGCAGCACATTAAGGAGGAGTTCTCCGTGCGACAGGAGGAAGCCGCTCAGGCCAGACGACAGCAGAGAGAGTTTCAGCAATCTGTCCTGACGCTCCTCCATCAGCTCGTCCACGTCCTCAGCAGCAGAACCGCCCCCTCGTCCCCGCCCCTCGACTAGCGCCgctcttcctccctcctcccacACCTTCTCACGTcacgttattttttttatttttgataaatCTCTGATTTGCACCGTGTTGTTTAATCGCACTTTAAACGTAGCTTTCAGTCTTTATTGCTGTGATTCAGGagcattattttctttttacctt

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome
ko05168 Herpes simplex virus 1 infection

RNA

RNA id representative length rna type GC content exon number start site end site
TU239496 True 624 TUCP 0.58 3 25498180 25502628

Neighbor

gene id symbol gene type direction distance location
LOC117598572 LOC108273858 coding upstream 100163 25394338 ~ 25398017 (+)
LOC117598571 LOC108273860,LOC108415358 coding upstream 103878 25390697 ~ 25394302 (+)
LOC113524867 LOC108273861,LOC108415359,LOC107676426,LOC107597761,LOC107748324,LOC107718692,LOC104943471,LOC108416695 coding upstream 108299 25386835 ~ 25389881 (+)
LOC117598570 dusp13,LOC108273859,LOC107748394,LOC107595212 coding upstream 111792 25382865 ~ 25386388 (+)
LOC113527655 LOC108274290 coding upstream 227527 25260740 ~ 25270653 (+)
polr3a polr3a coding downstream 207265 25709893 ~ 25745120 (+)
tbata LOC108273511 coding downstream 270886 25773514 ~ 25791680 (+)
star2 LOC108274109 coding downstream 301161 25803789 ~ 25818928 (+)
ndr2 nodal coding downstream 467341 25969969 ~ 25973840 (+)
lrrc20 lrrc20 coding downstream 472403 25975031 ~ 25981707 (+)
G202386 NA non-coding upstream 34013 25463806 ~ 25464167 (+)
G202336 LOC108443317,LOC108273866,LOC107597760,LOC102207794 non-coding upstream 55955 25438893 ~ 25442225 (+)
G202354 NA non-coding upstream 89174 25403842 ~ 25409006 (+)
G202355 NA non-coding upstream 90463 25406097 ~ 25407717 (+)
G202339 NA non-coding upstream 128525 25369330 ~ 25369655 (+)
G202400 NA non-coding downstream 516 25503144 ~ 25513154 (+)
G202401 NA non-coding downstream 2727 25505355 ~ 25565927 (+)
G202403 NA non-coding downstream 6652 25509280 ~ 25509506 (+)
G202420 NA non-coding downstream 51777 25554405 ~ 25557800 (+)
G202439 NA non-coding downstream 83727 25586355 ~ 25586764 (+)
dupd1 comtd1,cmtd1,LOC108273857 other upstream 70068 25329209 ~ 25428112 (+)
LOC113527710 hmx3 other upstream 831572 24661044 ~ 24666608 (+)
LOC113527444 chst15 other upstream 992104 24455659 ~ 24506076 (+)
G201962 NA other upstream 1115893 24381787 ~ 24382287 (+)
afap1 afap1,LOC107733469,LOC107657296,LOC107584377 other upstream 1809763 23604837 ~ 23688417 (+)
LOC117598538 NA other downstream 497023 25999651 ~ 26005825 (+)

Expression


Co-expression Network