G202386


Basic Information

Item Value
gene id G202386
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 25463806 ~ 25464167 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU239508
agagagagagagagagagagagagagagaaagagagacagagagaaagagagacagagagacagagagagagagagacagagagagagacagagagagagagacagagagagagacagacagacaggtgtgcGTTACCTGTGTAGGAAGGCTTTGTATGCGTCAGAGATGAGCTTTTTCTGGGCGTGTCTAATCGCATCACGCTGCTCTTTATCAGGAATCGCCCACACCTTCTGAATCTTACACAACTCCTCCAGACCGTCATtaaaaccctacacacacacacacacacacacacacacacacacacacacacacacacacacacaccagtcaag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU239508 True 337 lncRNA 0.49 2 25463806 25464167

Neighbor

gene id symbol gene type direction distance location
LOC117598572 LOC108273858 coding upstream 65789 25394338 ~ 25398017 (+)
LOC117598571 LOC108273860,LOC108415358 coding upstream 69504 25390697 ~ 25394302 (+)
LOC113524867 LOC108273861,LOC108415359,LOC107676426,LOC107597761,LOC107748324,LOC107718692,LOC104943471,LOC108416695 coding upstream 73925 25386835 ~ 25389881 (+)
LOC117598570 dusp13,LOC108273859,LOC107748394,LOC107595212 coding upstream 77418 25382865 ~ 25386388 (+)
LOC113527655 LOC108274290 coding upstream 193153 25260740 ~ 25270653 (+)
polr3a polr3a coding downstream 245726 25709893 ~ 25745120 (+)
tbata LOC108273511 coding downstream 309347 25773514 ~ 25791680 (+)
star2 LOC108274109 coding downstream 339622 25803789 ~ 25818928 (+)
ndr2 nodal coding downstream 505802 25969969 ~ 25973840 (+)
lrrc20 lrrc20 coding downstream 510864 25975031 ~ 25981707 (+)
G202336 LOC108443317,LOC108273866,LOC107597760,LOC102207794 non-coding upstream 21581 25438893 ~ 25442225 (+)
G202354 NA non-coding upstream 54800 25403842 ~ 25409006 (+)
G202355 NA non-coding upstream 56089 25406097 ~ 25407717 (+)
G202339 NA non-coding upstream 94151 25369330 ~ 25369655 (+)
G202342 NA non-coding upstream 172841 25290741 ~ 25290965 (+)
G202400 NA non-coding downstream 38977 25503144 ~ 25513154 (+)
G202401 NA non-coding downstream 41188 25505355 ~ 25565927 (+)
G202403 NA non-coding downstream 45113 25509280 ~ 25509506 (+)
G202420 NA non-coding downstream 90238 25554405 ~ 25557800 (+)
G202439 NA non-coding downstream 122188 25586355 ~ 25586764 (+)
dupd1 comtd1,cmtd1,LOC108273857 other upstream 35694 25329209 ~ 25428112 (+)
LOC113527710 hmx3 other upstream 797198 24661044 ~ 24666608 (+)
LOC113527444 chst15 other upstream 957730 24455659 ~ 24506076 (+)
G201962 NA other upstream 1081519 24381787 ~ 24382287 (+)
afap1 afap1,LOC107733469,LOC107657296,LOC107584377 other upstream 1775389 23604837 ~ 23688417 (+)
G202397 LOC108273443 other downstream 33548 25497715 ~ 25498919 (+)
G202374 NA other downstream 34013 25498180 ~ 25502628 (+)
LOC117598538 NA other downstream 535484 25999651 ~ 26005825 (+)

Expression


Co-expression Network