G202403


Basic Information

Item Value
gene id G202403
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 25509280 ~ 25509506 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU239529
cctacatctcacacacacattacacacattttatgaccttcattaagttgcgCTCGAGTAACTGTCAgattgtgatataaaaaaataaataaaaagtaaaataacagactgtgctggatcaagtgctattctatgtgctgctgaataatgagtgagtgtggaagccattttgttcaattaaaccaGCGATTAACGTGAGAATTAACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU239529 True 207 lncRNA 0.35 2 25509280 25509506

Neighbor

gene id symbol gene type direction distance location
LOC117598572 LOC108273858 coding upstream 111263 25394338 ~ 25398017 (+)
LOC117598571 LOC108273860,LOC108415358 coding upstream 114978 25390697 ~ 25394302 (+)
LOC113524867 LOC108273861,LOC108415359,LOC107676426,LOC107597761,LOC107748324,LOC107718692,LOC104943471,LOC108416695 coding upstream 119399 25386835 ~ 25389881 (+)
LOC117598570 dusp13,LOC108273859,LOC107748394,LOC107595212 coding upstream 122892 25382865 ~ 25386388 (+)
LOC113527655 LOC108274290 coding upstream 238627 25260740 ~ 25270653 (+)
polr3a polr3a coding downstream 200387 25709893 ~ 25745120 (+)
tbata LOC108273511 coding downstream 264008 25773514 ~ 25791680 (+)
star2 LOC108274109 coding downstream 294283 25803789 ~ 25818928 (+)
ndr2 nodal coding downstream 460463 25969969 ~ 25973840 (+)
lrrc20 lrrc20 coding downstream 465525 25975031 ~ 25981707 (+)
G202386 NA non-coding upstream 45113 25463806 ~ 25464167 (+)
G202336 LOC108443317,LOC108273866,LOC107597760,LOC102207794 non-coding upstream 67055 25438893 ~ 25442225 (+)
G202354 NA non-coding upstream 100274 25403842 ~ 25409006 (+)
G202355 NA non-coding upstream 101563 25406097 ~ 25407717 (+)
G202339 NA non-coding upstream 139625 25369330 ~ 25369655 (+)
G202420 NA non-coding downstream 44899 25554405 ~ 25557800 (+)
G202439 NA non-coding downstream 76849 25586355 ~ 25586764 (+)
G202445 NA non-coding downstream 89269 25598775 ~ 25602438 (+)
G202455 NA non-coding downstream 131530 25641036 ~ 25697150 (+)
G202457 NA non-coding downstream 138883 25648389 ~ 25649882 (+)
G202374 NA other upstream 6652 25498180 ~ 25502628 (+)
G202397 LOC108273443 other upstream 10361 25497715 ~ 25498919 (+)
dupd1 comtd1,cmtd1,LOC108273857 other upstream 81168 25329209 ~ 25428112 (+)
LOC113527710 hmx3 other upstream 842672 24661044 ~ 24666608 (+)
LOC113527444 chst15 other upstream 1003204 24455659 ~ 24506076 (+)
LOC117598538 NA other downstream 490145 25999651 ~ 26005825 (+)

Expression


Co-expression Network