G202455


Basic Information

Item Value
gene id G202455
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 25641036 ~ 25697150 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU239584
tccacacacacacacacacacacacacacacacacacacacacacacacatgtataaaatgatgtgtagtttatatatgtttataaaggcacatacacactctataaGGCCATAATGATTGTACTTCCTGTGTAACACGACTCACTAAGCTGATATAAATGTAGAATAAACTCTGTGTAGAAATCTGCCAcaggttttcacacacacacacacacacacacacacacacacacacacactaatgcagcTCACGCACACGCCAGGCTGCAGGAGCACCAGTGTGAGTATGactgtgtgtcggtgtgtgtgtcggtgtcagtgtgtgtgtcggtgtgtgtgtcagtgtcagtgtgtgtgtcggtgtgtgtgtcagtgtcagtgtgtgtgtcggtgcgtgtgtcggtgtgagtgtgtgtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU239584 True 417 lncRNA 0.47 3 25641036 25697150

Neighbor

gene id symbol gene type direction distance location
LOC117598572 LOC108273858 coding upstream 243019 25394338 ~ 25398017 (+)
LOC117598571 LOC108273860,LOC108415358 coding upstream 246734 25390697 ~ 25394302 (+)
LOC113524867 LOC108273861,LOC108415359,LOC107676426,LOC107597761,LOC107748324,LOC107718692,LOC104943471,LOC108416695 coding upstream 251155 25386835 ~ 25389881 (+)
LOC117598570 dusp13,LOC108273859,LOC107748394,LOC107595212 coding upstream 254648 25382865 ~ 25386388 (+)
LOC113527655 LOC108274290 coding upstream 370383 25260740 ~ 25270653 (+)
polr3a polr3a coding downstream 12743 25709893 ~ 25745120 (+)
tbata LOC108273511 coding downstream 76364 25773514 ~ 25791680 (+)
star2 LOC108274109 coding downstream 106639 25803789 ~ 25818928 (+)
ndr2 nodal coding downstream 272819 25969969 ~ 25973840 (+)
lrrc20 lrrc20 coding downstream 277881 25975031 ~ 25981707 (+)
G202445 NA non-coding upstream 38598 25598775 ~ 25602438 (+)
G202439 NA non-coding upstream 54272 25586355 ~ 25586764 (+)
G202401 NA non-coding upstream 75109 25505355 ~ 25565927 (+)
G202420 NA non-coding upstream 83236 25554405 ~ 25557800 (+)
G202400 NA non-coding upstream 127882 25503144 ~ 25513154 (+)
G202541 NA non-coding downstream 251721 25948871 ~ 25968572 (+)
G202557 LOC108273842,LOC108266876,LOC108266882,LOC108266898 non-coding downstream 291958 25989108 ~ 25995087 (+)
G202567 NA non-coding downstream 335990 26033140 ~ 26033815 (+)
LOC117598627 NA non-coding downstream 362474 26059624 ~ 26064285 (+)
G202593 NA non-coding downstream 421574 26118724 ~ 26137814 (+)
G202374 NA other upstream 138408 25498180 ~ 25502628 (+)
G202397 LOC108273443 other upstream 142117 25497715 ~ 25498919 (+)
dupd1 comtd1,cmtd1,LOC108273857 other upstream 212924 25329209 ~ 25428112 (+)
LOC113527710 hmx3 other upstream 974428 24661044 ~ 24666608 (+)
LOC113527444 chst15 other upstream 1134960 24455659 ~ 24506076 (+)
LOC117598538 NA other downstream 302501 25999651 ~ 26005825 (+)

Expression


Co-expression Network