G202457


Basic Information

Item Value
gene id G202457
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 25648389 ~ 25649882 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU239586
CCGAAGAACGTAACCATGGACGAGGCGAGGAAGGCCCACCACATGCGCTGGCCATTACTGTCGCACGGTACGTCGGCGAAGTACGGGATGATCAGGTCCATCTTCTTCGGGTTCGCCATCATGGAGTTTTGGGAGGGCTCGAGCCGAACGTCACCATCTTTAGCTGGAAGCATGCGGGCCCTGAATGCTCATCGGCCATGTAGACCCGCTCAACGTGGGAAGAGATAGCAGGAAGAAACCCCACTGAGAAAATGGAAATCAAAAGAGAGTCATGTTTATCAGTGGTGAAACTCCATCAATGAGGACAAGAAGTTCACGATTCGGATTAATCCGTACTCTGGGAATCGGATTTAGCAATGAATCCATGGAAACGCATGTTTGTGGAGTTCAGCTGTAGTCTTTatcactgtggtgtgtgtgtgtgtggagagaagCAGACGAGAAGTTCACATGACGGCTGGCAAAGAAAGAACCAAAGACAGAACTTCGTGGTCTTGTTCTTGATTTTTAGTGGCaaaatttccattaaaaaaaaaccacagttgTTTACTGAAGTGGATTTATCTGAAGATTTTAGCCCATGATTCATTACCAACATCAAACATCATGGATCTTCACGAGTCCTGAGGTGAGATCAGCTTCAGAGATCAGTCTGTGTTATATCAGTCCTtcataaacctgtgtgtgtgtgtgtgtgtgtgtgtgtattaaaatggaaaataacacgacttgtggtgtgttttcttttcattccgCTGATAATAAACTCCTGTAGCTGGTGTCGTTTCCGTTCCTGGGATTAGTTTTCTCCGAAACATCAAAGCAAACAGGAGACAGGATATccgctcctcttcctcctctcctctgttATTCCTCCTCTCTTCATTtattcctcctctcctctgttaCTCCTCCTCTCCTCAGTTATTCCTccgctcctcttcctcctctcctcagTTATTCCTCTTCTCCTCAGTtattcctcctctcctctgttattcctcttctcctctgttactcctcctctcctctgttattcctcttctcctctgttactcctcctctcctctgttaTTCCTCTTCTCCTCTGTTATTCCTCCTCACGCATTTTATTCCCGTGTTTCTTCTGCTCGATGATTTACCGGTACTCAGGTACACAGAAGGGCGGATGCTCTTCATTAATCACAAGCCAAACCTCCGAAACGCTCCGAATTCTGCTTCAAGTCGCGCGAAACATCTCAATTCGACGCTTTAAATCCGAATGAAACAttttcatgaagaaaaaaaaaattgtcattcaGTACCTCATAGATCCGCTCCTTCTCTCAGgctggaataataataataatgctgctgctgctgatgatgatgatgatgatgataaagaaatgaaaaaggcaACAGGTTTGGAGAAGCGGTGAGTTGGACGGGAGCTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU239586 True 1437 lncRNA 0.45 2 25648389 25649882

Neighbor

gene id symbol gene type direction distance location
LOC117598572 LOC108273858 coding upstream 250372 25394338 ~ 25398017 (+)
LOC117598571 LOC108273860,LOC108415358 coding upstream 254087 25390697 ~ 25394302 (+)
LOC113524867 LOC108273861,LOC108415359,LOC107676426,LOC107597761,LOC107748324,LOC107718692,LOC104943471,LOC108416695 coding upstream 258508 25386835 ~ 25389881 (+)
LOC117598570 dusp13,LOC108273859,LOC107748394,LOC107595212 coding upstream 262001 25382865 ~ 25386388 (+)
LOC113527655 LOC108274290 coding upstream 377736 25260740 ~ 25270653 (+)
polr3a polr3a coding downstream 60011 25709893 ~ 25745120 (+)
tbata LOC108273511 coding downstream 123632 25773514 ~ 25791680 (+)
star2 LOC108274109 coding downstream 153907 25803789 ~ 25818928 (+)
ndr2 nodal coding downstream 320087 25969969 ~ 25973840 (+)
lrrc20 lrrc20 coding downstream 325149 25975031 ~ 25981707 (+)
G202445 NA non-coding upstream 45951 25598775 ~ 25602438 (+)
G202439 NA non-coding upstream 61625 25586355 ~ 25586764 (+)
G202401 NA non-coding upstream 82462 25505355 ~ 25565927 (+)
G202467 NA non-coding downstream 42197 25692079 ~ 25782711 (+)
G202541 NA non-coding downstream 298989 25948871 ~ 25968572 (+)
G202557 LOC108273842,LOC108266876,LOC108266882,LOC108266898 non-coding downstream 339226 25989108 ~ 25995087 (+)
G202567 NA non-coding downstream 383258 26033140 ~ 26033815 (+)
LOC117598627 NA non-coding downstream 409742 26059624 ~ 26064285 (+)
G202374 NA other upstream 145761 25498180 ~ 25502628 (+)
G202397 LOC108273443 other upstream 149470 25497715 ~ 25498919 (+)
dupd1 comtd1,cmtd1,LOC108273857 other upstream 220277 25329209 ~ 25428112 (+)
LOC113527710 hmx3 other upstream 981781 24661044 ~ 24666608 (+)
LOC113527444 chst15 other upstream 1142313 24455659 ~ 24506076 (+)
LOC117598538 NA other downstream 349769 25999651 ~ 26005825 (+)

Expression


Co-expression Network