G202567


Basic Information

Item Value
gene id G202567
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 26033140 ~ 26033815 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU239721
cGCTCACTCACAAacgctcactcacacacacttctcacacactctcacacacactcacacacacacactcacacagacacagtccttgtgaggactttccactgatataattattaatgcagctcaTTAACATGAtgctaaatctaaatctaaccctaacattTAACTTCtgtaaccaaaatgaaaattcttgttttagtttttttccttttagttttttttaaataaaagatgcatttttttggaaaaaaaagtttccatgTTAGGAGCCGCAAAAACGTCCCCACGAGGtgaaaactgtcagatattcctattcttgtggggacatttggtcctcaccaagatataaagacacacacacacacacaccctacacacacacattcacactacacacagatctgtgtgtgtgtgtgtctgtggataATGATGAAGTTCAGGCCCTAAAATCGTCGCCAAAGTGTCTCATCTGATCTTCTGTCATCGAGAGGTAGTTGGCTCGCATAGTGGGAGA
>TU239722
cactctcacacacttcacacacactctctcacacactctcacacacacactcacacagacacagtccttgtgaggactttccactgatataattattaatgcagctcaTTAACATGAtgctaaatctaaatctaaccctaacattTAACTTCtgtaaccaaaatgaaaattcttgttttagtttttttccttttagttttttttaaataaaagatgcatttttttggaaaaaaaagtttccatgTTAGGAGCCGCAAAAACGTCCCCACGAGGtgaaaactgtcagatattcctattcttgtggggacatttggtcctcaccaagatataaagacacacacacacacacaccctacacacacacattcacactacacacagatctgtgtgtgtgtgtgtctgtggataATGATGAAGTTCAGGCCCTAAAATCGTCGCCAAAGTGTCTCATCTGATCTTCTGTCATCGAGAGGTAGTTGGCTCGCATAGTGGGAGA
>TU239723
cGCTCACTCACAAacgctcactcacacacacttctcacacactctcacacacacactctcacacacacactcacacagacacagtccttgtgaggactttccactgatataattattaatgcagctcaTTAACATGAtgctaaatctaaatctaaccctaacattTAACTTCtgtaaccaaaatgaaaattcttgttttagtttttttccttttagttttttttaaataaaagatgcatttttttggaaaaaaaagtttccatgTTAGGAGCCGCAAAAACGTCCCCACGAGGtgaaaactgtcagatattcctattcttgtggggacatttggtcctcaccaagatataaagacacacacacacacacaccctacacacacacattcacactacacacagatctgtgtgtgtgtgtgtctgtggataATGATGAAGTTCAGGCCCTAAAATCGTCGCCAAAGTGTCTCATCTGATCTTCTGTCATCGAGAGGTAGTTGGCTCGCATAGTGGGAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU239721 False 514 lncRNA 0.40 2 26033245 26033815
TU239722 False 496 lncRNA 0.40 2 26033140 26033815
TU239723 True 516 lncRNA 0.40 2 26033245 26033815

Neighbor

gene id symbol gene type direction distance location
lrrc20 lrrc20 coding upstream 51433 25975031 ~ 25981707 (+)
ndr2 nodal coding upstream 59300 25969969 ~ 25973840 (+)
star2 LOC108274109 coding upstream 214212 25803789 ~ 25818928 (+)
tbata LOC108273511 coding upstream 241460 25773514 ~ 25791680 (+)
polr3a polr3a coding upstream 288020 25709893 ~ 25745120 (+)
sdk2b sdk2b,sdk2,LOC108442036 coding downstream 251859 26285674 ~ 26426786 (+)
LOC117598613 NA coding downstream 393034 26426849 ~ 26429873 (+)
LOC113547530 LOC108274151 coding downstream 403228 26437043 ~ 26444597 (+)
LOC113547461 LOC108273446,LOC105918829 coding downstream 484175 26517990 ~ 26526734 (+)
ndufb8 ndufb8 coding downstream 505424 26539239 ~ 26546663 (+)
G202557 LOC108273842,LOC108266876,LOC108266882,LOC108266898 non-coding upstream 38053 25989108 ~ 25995087 (+)
G202541 NA non-coding upstream 64568 25948871 ~ 25968572 (+)
G202467 NA non-coding upstream 250429 25692079 ~ 25782711 (+)
G202455 NA non-coding upstream 335990 25641036 ~ 25697150 (+)
G202457 NA non-coding upstream 383258 25648389 ~ 25649882 (+)
LOC117598627 NA non-coding downstream 25809 26059624 ~ 26064285 (+)
G202593 NA non-coding downstream 84909 26118724 ~ 26137814 (+)
G202761 NA non-coding downstream 170843 26204658 ~ 26207793 (+)
G202804 NA non-coding downstream 336191 26370006 ~ 26383059 (+)
G202813 NA non-coding downstream 398681 26432496 ~ 26432699 (+)
LOC117598538 NA other upstream 27315 25999651 ~ 26005825 (+)
G202374 NA other upstream 530512 25498180 ~ 25502628 (+)
G202397 LOC108273443 other upstream 534221 25497715 ~ 25498919 (+)
dupd1 comtd1,cmtd1,LOC108273857 other upstream 605028 25329209 ~ 25428112 (+)
LOC113527710 hmx3 other upstream 1366532 24661044 ~ 24666608 (+)

Expression


Co-expression Network