G202804


Basic Information

Item Value
gene id G202804
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 26370006 ~ 26383059 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU240072
AAAAGAAACGCAAACACACCACCTCTGtacaggccacgcccccaagCAAAACAATAGCAGTCCTTACACACTCACAAGAGACAAAAGGTCACCtgctagtgtgtgtttagtgtgtgtttagtgtgtgtgtttagtgtgagtttagtgtgtgtttagtgtgtgtttagtgtgagtttagtgtgagtttagtgtgtgtttagtgtgagtttagtgtgagtttagtgtgtgtttagtgtgagtttagtgtgtgtttagtgtgagtttagtgtgtgtttagtgtgagtttagtgtgtgtttagtgtgtgtttagtgtgagtttagtgtgtgtttagtgtgtgtttagtgtgagtttagtgtgtgtttagtgtgagtttagtgtgtgtttagtttagtgtgtgtttagtgtgtgtttagtgtgtgtttagtgtgtgtttagtgtgagtttagtgtgtgtttagtgtgtgtttagtgtgtgtttagtgtgagtttagtgtgtgtttagtgtgtgtttagtgtgt
>TU240073
GGGTTGTGGttgtgtgtgagtttagtgtgtgtttagtgtgagtttagtgtgagtttagtgtgtgtttagtgtgagtttagtgtgtgtttagtgtgagtttagtgtgtgtttagtgtgagtttagtgtgtgtttagtgtgtgtttagtgtgagtttagtgtgtgtttagtgtgtgtttagtgtgagtttagtgtgtgtttagtgtgagtttagtgtgtgtttagtttagtgtgtgtttagtgtgtgtttagtgtgtgtttagtgtgtgtttagtgtgagtttagtgtgtgtttagtgtgtgtttagtgtgtgtttagtgtgagtttagtgtgtgtttagtgtgtgtttagtgtgt

Function

GO:

id name namespace
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG:

id description
ko04512 ECM-receptor interaction
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU240072 True 518 lncRNA 0.39 2 26382253 26383059
TU240073 False 354 lncRNA 0.37 2 26370006 26383059

Neighbor

gene id symbol gene type direction distance location
lrrc20 lrrc20 coding upstream 388299 25975031 ~ 25981707 (+)
ndr2 nodal coding upstream 396166 25969969 ~ 25973840 (+)
star2 LOC108274109 coding upstream 551078 25803789 ~ 25818928 (+)
tbata LOC108273511 coding upstream 578326 25773514 ~ 25791680 (+)
polr3a polr3a coding upstream 624886 25709893 ~ 25745120 (+)
LOC117598613 NA coding downstream 43790 26426849 ~ 26429873 (+)
LOC113547530 LOC108274151 coding downstream 53984 26437043 ~ 26444597 (+)
LOC113547461 LOC108273446,LOC105918829 coding downstream 134931 26517990 ~ 26526734 (+)
ndufb8 ndufb8 coding downstream 156180 26539239 ~ 26546663 (+)
G202761 NA non-coding upstream 162213 26204658 ~ 26207793 (+)
G202593 NA non-coding upstream 232192 26118724 ~ 26137814 (+)
LOC117598627 NA non-coding upstream 305721 26059624 ~ 26064285 (+)
G202567 NA non-coding upstream 336191 26033140 ~ 26033815 (+)
G202557 LOC108273842,LOC108266876,LOC108266882,LOC108266898 non-coding upstream 374919 25989108 ~ 25995087 (+)
G202813 NA non-coding downstream 49437 26432496 ~ 26432699 (+)
G202824 NA non-coding downstream 123044 26506103 ~ 26524105 (+)
LOC117598538 NA other upstream 364181 25999651 ~ 26005825 (+)
G202374 NA other upstream 867378 25498180 ~ 25502628 (+)
G202397 LOC108273443 other upstream 871087 25497715 ~ 25498919 (+)
dupd1 comtd1,cmtd1,LOC108273857 other upstream 941894 25329209 ~ 25428112 (+)
LOC113527710 hmx3 other upstream 1703398 24661044 ~ 24666608 (+)

Expression


Co-expression Network