G202813


Basic Information

Item Value
gene id G202813
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 26432496 ~ 26432699 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU240082
cacaatttaaaatgttaaaaatgtttgtacgaTGCGGAGCTTCAATATTAGATTAAATTGTTTACATGAGGGGAAAAGACATGTTATAAACTACTGCTCAGAAAACCAGCTGAACTCACTGATCAGACCAAGCTGAGGACTATCAGAACATGGCCTGATATTTTAAGAGACTTGATTGGTATCTCACAGGACCTCCAGCCTCCA

Function

GO:

id name namespace
GO:0004112 cyclic-nucleotide phosphodiesterase activity molecular_function
GO:0004114 3',5'-cyclic-nucleotide phosphodiesterase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU240082 True 204 lncRNA 0.38 1 26432496 26432699

Neighbor

gene id symbol gene type direction distance location
LOC117598613 NA coding upstream 2623 26426849 ~ 26429873 (+)
sdk2b sdk2b,sdk2,LOC108442036 coding upstream 5710 26285674 ~ 26426786 (+)
lrrc20 lrrc20 coding upstream 450789 25975031 ~ 25981707 (+)
ndr2 nodal coding upstream 458656 25969969 ~ 25973840 (+)
star2 LOC108274109 coding upstream 613568 25803789 ~ 25818928 (+)
LOC113547530 LOC108274151 coding downstream 4344 26437043 ~ 26444597 (+)
LOC113547461 LOC108273446,LOC105918829 coding downstream 85291 26517990 ~ 26526734 (+)
ndufb8 ndufb8 coding downstream 106540 26539239 ~ 26546663 (+)
G202804 NA non-coding upstream 49437 26370006 ~ 26383059 (+)
G202761 NA non-coding upstream 224703 26204658 ~ 26207793 (+)
G202593 NA non-coding upstream 294682 26118724 ~ 26137814 (+)
LOC117598627 NA non-coding upstream 368211 26059624 ~ 26064285 (+)
G202567 NA non-coding upstream 398681 26033140 ~ 26033815 (+)
G202824 NA non-coding downstream 73404 26506103 ~ 26524105 (+)
LOC117598538 NA other upstream 426671 25999651 ~ 26005825 (+)
G202374 NA other upstream 929868 25498180 ~ 25502628 (+)
G202397 LOC108273443 other upstream 933577 25497715 ~ 25498919 (+)
dupd1 comtd1,cmtd1,LOC108273857 other upstream 1004384 25329209 ~ 25428112 (+)
LOC113527710 hmx3 other upstream 1765888 24661044 ~ 24666608 (+)

Expression


Co-expression Network